2AHKB

Crystal structure of the met-form of the copper-bound streptomyces castaneoglobisporus tyrosinase in complex with a caddie protein obtained by soking in cupric sulfate for 6 months
Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
83
structure length
72
Chain Sequence
AAPESFDEVYKGRRIQGRPAGYEVFVDGVQLHVMRNADGSWISVVSHYDPVPTPRAAARAAVDELQGAPLLP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYTIV1 (48-51)S1 (45-49)S2 (52-57)TIV2 (58-72)Updating...
connected with : NaN
molecule tags Oxidoreductase/metal transport
source organism Streptomyces castaneoglobisporus
publication title Crystallographic Evidence That the Dinuclear Copper Center of Tyrosinase Is Flexible during Catalysis
pubmed doi rcsb
molecule keywords TYROSINASE
total genus 15
structure length 72
sequence length 83
ec nomenclature
pdb deposition date 2005-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF06236 MelC1 Tyrosinase co-factor MelC1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1880.10 Alpha Beta 2-Layer Sandwich protein ne1242 fold protein ne1242 domain like 2ahkB01
3AWZB 3AWXB 2ZMXB 3AWWB 1WX2B 3AX0B 2ZWGB 2AHKB 3AWVB 3AWUB 2ZWDB 1WX5B 2ZWEB 3AWSB 2ZMZB 2ZMYB 3AWTB 1WX4B 3AWYB 2AHLB 2ZWFB 1WXCB 2JV8A
chains in the Genus database with same CATH superfamily
3AWZB 3AWXB 3GKQA 2ZMXB 2DE5A 3AWWB 1WX2B 3VMIA 4NBCA 3AX0B 2ZWGB 2AHKB 3AWVB 1Z02A 3AWUB 4NBFA 4NB8A 2ZWDB 4NBBA 4NB9A 4NBEA 1WX5B 2DE6A 3GCFA 2ZWEB 3AWSB 4NBGA 2ZMZB 2ZMYB 3AWTB 4NBDA 1Z03A 1WX4B 3AWYB 2AHLB 3VMHA 2ZWFB 1Z01A 4NBAA 3VMGA 4NBHA 1WXCB 2JV8A 1WW9A 2DE7A
chains in the Genus database with same CATH topology
3AWZB 3AWXB 2ZMXB 3AWWB 1WX2B 3AX0B 2ZWGB 2AHKB 3AWVB 3AWUB 2ZWDB 1WX5B 2ZWEB 3AWSB 2ZMZB 2ZMYB 3AWTB 1WX4B 3AWYB 2AHLB 2ZWFB 1WXCB 2JV8A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3AWZ B;  3AWX B;  2ZMX B;  3AWW B;  1WX2 B;  3AX0 B;  2ZWG B;  2AHK B;  3AWV B;  3AWU B;  2ZWD B;  1WX5 B;  2ZWE B;  3AWS B;  2ZMZ B;  2ZMY B;  3AWT B;  1WX4 B;  3AWY B;  2AHL B;  2ZWF B;  1WXC B;  2JV8 A; 
#chains in the Genus database with same CATH topology
 3AWZ B;  3AWX B;  3GKQ A;  2ZMX B;  2DE5 A;  3AWW B;  1WX2 B;  3VMI A;  4NBC A;  3AX0 B;  2ZWG B;  2AHK B;  3AWV B;  1Z02 A;  3AWU B;  4NBF A;  4NB8 A;  2ZWD B;  4NBB A;  4NB9 A;  4NBE A;  1WX5 B;  2DE6 A;  3GCF A;  2ZWE B;  3AWS B;  4NBG A;  2ZMZ B;  2ZMY B;  3AWT B;  4NBD A;  1Z03 A;  1WX4 B;  3AWY B;  2AHL B;  3VMH A;  2ZWF B;  1Z01 A;  4NBA A;  3VMG A;  4NBH A;  1WXC B;  2JV8 A;  1WW9 A;  2DE7 A; 
#chains in the Genus database with same CATH homology
 3AWZ B;  3AWX B;  2ZMX B;  3AWW B;  1WX2 B;  3AX0 B;  2ZWG B;  2AHK B;  3AWV B;  3AWU B;  2ZWD B;  1WX5 B;  2ZWE B;  3AWS B;  2ZMZ B;  2ZMY B;  3AWT B;  1WX4 B;  3AWY B;  2AHL B;  2ZWF B;  1WXC B;  2JV8 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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