2POFA

Crystal structure of cdp-diacylglycerol pyrophosphatase
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
220
structure length
220
Chain Sequence
SDTLRKIVLEECLPNQQQNQNPSPCAEVKPNAGYVVLKDLNGPLQYLLMPTYRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYGQPVPDRAVSLAINSRTGRTQNHFHIHISCIRPDVREQLDNNLANISSRWLPLPGGLRGHEYLARRVTESELVQRSPFMMLAEEVPEAREHMGSYGLAMVRQSDNSFVLLATQRNLLTLNRASAEEIQDHQCEIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of CDP-diacylglycerol pyrophosphatase.
rcsb
molecule tags Hydrolase
source organism Escherichia coli
molecule keywords CDP-diacylglycerol pyrophosphatase
total genus 59
structure length 220
sequence length 220
chains with identical sequence B
ec nomenclature ec 3.6.1.26: CDP-diacylglycerol diphosphatase.
pdb deposition date 2007-04-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02611 CDH CDP-diacylglycerol pyrophosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.30 Alpha Beta 2-Layer Sandwich HIT family, subunit A HIT family - CDH-like 2pofA00
2POFA
chains in the Genus database with same CATH superfamily
2OIKA 2R7JA 3IMIA 1GUPA 5CS2A 1L9VA 4G0AA 4XBAA 5IN3A 5IPBA 5ED3A 1AV5A 3KSVA 6RHNA 3SZQA 3LB5A 4YKLB 2FHIA 3OMFA 4NK0A 4NJZA 1KPCA 1ST4A 3BL7A 1ST0A 3ANOA 5IPDA 2Q4LA 4EQEA 4NDHA 3P0TA 3SP4A 1HXQA 5IPCA 2R7PA 5BV3A 4I5VA 5EMTA 4QDEA 1XMLA 4ZKVA 2R7CA 1KPBA 3RHNA 3O1CA 3R6FA 3SPLA 2EO4A 2H39A 3N1SA 1XMMA 5ED6A 4INCA 1Z84A 3NRDA 5I2FA 4EQGA 1KPFA 4EQHA 3FITA 3QGZA 2LJWA 4ZKLA 4QEBA 3SPDA 1FHIA 3OXKA 2POFA 2R8FA 4NDIA 1FITA 1EMSA 3OJ7A 3O1ZA 1Y23A 2Q4HA 3I4SA 4I5WA 4QDVA 3O1XA 4RHNA 3L7XA 5I2EA 1RZYA 4NJYA 3I24A 4FITA 3TW2A 4I5TA 1GUQA 3BLAA 3BL9A 1KPEA 4G0JA 5FITA 3O0MA 5RHNA 6FITA 4NJXA 5IPEA 3WO5A 2FITA 1ZWJA 4INIA 4NDGA 1HXPA 3N1TA 1VLRA 1KPAA 4NDFA 4ZGLA 3OHEA 2GU0A 4EGUA
chains in the Genus database with same CATH topology
2POFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2POF A; 
#chains in the Genus database with same CATH topology
 2OIK A;  2R7J A;  3IMI A;  1GUP A;  5CS2 A;  1L9V A;  4G0A A;  4XBA A;  5IN3 A;  5IPB A;  5ED3 A;  1AV5 A;  3KSV A;  6RHN A;  3SZQ A;  3LB5 A;  4YKL B;  2FHI A;  3OMF A;  4NK0 A;  4NJZ A;  1KPC A;  1ST4 A;  3BL7 A;  1ST0 A;  3ANO A;  5IPD A;  2Q4L A;  4EQE A;  4NDH A;  3P0T A;  3SP4 A;  1HXQ A;  5IPC A;  2R7P A;  5BV3 A;  4I5V A;  5EMT A;  4QDE A;  1XML A;  4ZKV A;  2R7C A;  1KPB A;  3RHN A;  3O1C A;  3R6F A;  3SPL A;  2EO4 A;  2H39 A;  3N1S A;  1XMM A;  5ED6 A;  4INC A;  1Z84 A;  3NRD A;  5I2F A;  4EQG A;  1KPF A;  4EQH A;  3FIT A;  3QGZ A;  2LJW A;  4ZKL A;  4QEB A;  3SPD A;  1FHI A;  3OXK A;  2POF A;  2R8F A;  4NDI A;  1FIT A;  1EMS A;  3OJ7 A;  3O1Z A;  1Y23 A;  2Q4H A;  3I4S A;  4I5W A;  4QDV A;  3O1X A;  4RHN A;  3L7X A;  5I2E A;  1RZY A;  4NJY A;  3I24 A;  4FIT A;  3TW2 A;  4I5T A;  1GUQ A;  3BLA A;  3BL9 A;  1KPE A;  4G0J A;  5FIT A;  3O0M A;  5RHN A;  6FIT A;  4NJX A;  5IPE A;  3WO5 A;  2FIT A;  1ZWJ A;  4INI A;  4NDG A;  1HXP A;  3N1T A;  1VLR A;  1KPA A;  4NDF A;  4ZGL A;  3OHE A;  2GU0 A;  4EGU A; 
#chains in the Genus database with same CATH homology
 2POF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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