2R7JA

Crystal structure of rotavirus non structural protein nsp2 with h225a mutation
Total Genus 92
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
311
structure length
307
Chain Sequence
AELACFCYPHLENDSYKFIPFNNLAIKAMLTAKVDKKDMDKFYDSIIYGIAPPPQFKKRYNTNDNSRGMNFETIMFTKVAMLICEALNSLKVTQANVSNVLSRVVSIRHLENLVIRKENPQDILFHSKDLLLKSTLIAIGQSKEIETTITAEGGEIVFQNAAFTMWKLTYLEHQLMPILDQNFIEYKVTLNEDKPISDVHVKELVAELRWQYNKFAVITHGKGAYRIVKYSSVANHADRVYATFKSNVKTGVNNDFNLLDQRIIWQNWYAFTSSMKQGNTLDVCKRLLFQKMKPFKGLSTDRKMDEV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystallographic and Biochemical Analysis of Rotavirus NSP2 with Nucleotides Reveals a Nucleoside Diphosphate Kinase-Like Activity
pubmed doi rcsb
molecule tags Rna binding protein
source organism Simian 11 rotavirus (serotype 3 / strain sa11-ramig)
molecule keywords Non-structural RNA-binding protein 35
total genus 92
structure length 307
sequence length 311
ec nomenclature
pdb deposition date 2007-09-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02509 Rota_NS35 Rotavirus non-structural protein 35
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.20 Alpha Beta 2-Layer Sandwich HIT family, subunit A Rotavirus NSP2 fragment, C-terminal domain 2r7jA02
3.90.1400.10 Alpha Beta Alpha-Beta Complex Rotavirus NSP2 fragment, N-terminal domain Rotavirus NSP2 fragment, N-terminal domain 2r7jA01
2R7PA 4G0JA 2R7CA 1L9VA 4G0AA 2R7JA 2R8FA 2GU0A
chains in the Genus database with same CATH superfamily
4YKLB 2POFA 4NDIA 1XMLA 3KSVA 1ST0A 1RZYA 4G0JA 4I5TA 3SPDA 6RHNA 1ZWJA 1KPBA 5I2EA 1FITA 5IN3A 2R7JA 1AV5A 4EGUA 2Q4HA 3N1TA 1GUPA 3OJ7A 4EQHA 5IPDA 1VLRA 2GU0A 3R6FA 3SZQA 4RHNA 2H39A 3P0TA 4XBAA 4EQGA 3I4SA 3OMFA 4NJZA 4ZGLA 2R7CA 5CS2A 1GUQA 3SP4A 4INCA 4ZKVA 1KPAA 2R8FA 4I5WA 4NJXA 1HXQA 4FITA 5IPCA 4QDEA 1KPEA 5ED6A 2EO4A 3O1XA 5EMTA 1FHIA 5BV3A 3O0MA 4G0AA 1Y23A 5RHNA 4I5VA 3NRDA 3O1ZA 4NDHA 4NJYA 3IMIA 4QEBA 1Z84A 3O1CA 3I24A 5FITA 4NDGA 1EMSA 4QDVA 2OIKA 3WO5A 6FITA 2LJWA 4EQEA 3TW2A 3BL7A 5ED3A 3L7XA 3QGZA 4NDFA 2Q4LA 5IPBA 3BLAA 2FITA 3OHEA 1XMMA 3N1SA 3SPLA 3FITA 3ANOA 3BL9A 3OXKA 3RHNA 5IPEA 5I2FA 2R7PA 1HXPA 1ST4A 1L9VA 3LB5A 4ZKLA 2FHIA 4NK0A 1KPCA 4INIA 1KPFA
chains in the Genus database with same CATH topology
2R7PA 4G0JA 2R7CA 1L9VA 4G0AA 2R7JA 2R8FA 2GU0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R7P A;  4G0J A;  2R7C A;  1L9V A;  4G0A A;  2R7J A;  2R8F A;  2GU0 A; 
#chains in the Genus database with same CATH topology
 4YKL B;  2POF A;  4NDI A;  1XML A;  3KSV A;  1ST0 A;  1RZY A;  4G0J A;  4I5T A;  3SPD A;  6RHN A;  1ZWJ A;  1KPB A;  5I2E A;  1FIT A;  5IN3 A;  2R7J A;  1AV5 A;  4EGU A;  2Q4H A;  3N1T A;  1GUP A;  3OJ7 A;  4EQH A;  5IPD A;  1VLR A;  2GU0 A;  3R6F A;  3SZQ A;  4RHN A;  2H39 A;  3P0T A;  4XBA A;  4EQG A;  3I4S A;  3OMF A;  4NJZ A;  4ZGL A;  2R7C A;  5CS2 A;  1GUQ A;  3SP4 A;  4INC A;  4ZKV A;  1KPA A;  2R8F A;  4I5W A;  4NJX A;  1HXQ A;  4FIT A;  5IPC A;  4QDE A;  1KPE A;  5ED6 A;  2EO4 A;  3O1X A;  5EMT A;  1FHI A;  5BV3 A;  3O0M A;  4G0A A;  1Y23 A;  5RHN A;  4I5V A;  3NRD A;  3O1Z A;  4NDH A;  4NJY A;  3IMI A;  4QEB A;  1Z84 A;  3O1C A;  3I24 A;  5FIT A;  4NDG A;  1EMS A;  4QDV A;  2OIK A;  3WO5 A;  6FIT A;  2LJW A;  4EQE A;  3TW2 A;  3BL7 A;  5ED3 A;  3L7X A;  3QGZ A;  4NDF A;  2Q4L A;  5IPB A;  3BLA A;  2FIT A;  3OHE A;  1XMM A;  3N1S A;  3SPL A;  3FIT A;  3ANO A;  3BL9 A;  3OXK A;  3RHN A;  5IPE A;  5I2F A;  2R7P A;  1HXP A;  1ST4 A;  1L9V A;  3LB5 A;  4ZKL A;  2FHI A;  4NK0 A;  1KPC A;  4INI A;  1KPF A; 
#chains in the Genus database with same CATH homology
 2R7P A;  4G0J A;  2R7C A;  1L9V A;  4G0A A;  2R7J A;  2R8F A;  2GU0 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...