2R7PA

Crystal structure of h225a nsp2 and amppnp complex
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
312
structure length
308
Chain Sequence
AELACFCYPHLENDSYKFIPFNNLAIKAMLTAKVDKKDMDKFYDSIIYGIAPPPQFKKRYNTNDNSRGMNFETIMFTKVAMLICEALNSLKVTQANVSNVLSRVVSIRHLENLVIRKENPQDILFHSKDLLLKSTLIAIGQSKEIETTITAEGGEIVFQNAAFTMWKLTYLEHQLMPILDQNFIEYKVTLNEDKPISDVHVKELVAELRWQYNKFAVITHGKGAYRIVKYSSVANHADRVYATFKSNVKNDFNLLDQRIIWQNWYAFTSSMKQGNTLDVCKRLLFQKMKPEKNPFKGLSTDRKMDEVS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystallographic and Biochemical Analysis of Rotavirus NSP2 with Nucleotides Reveals a Nucleoside Diphosphate Kinase-Like Activity
pubmed doi rcsb
molecule tags Rna binding protein
source organism Simian 11 rotavirus (serotype 3 / strain sa11-ramig)
molecule keywords Non-structural RNA-binding protein 35
total genus 90
structure length 308
sequence length 312
ec nomenclature
pdb deposition date 2007-09-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02509 Rota_NS35 Rotavirus non-structural protein 35
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.20 Alpha Beta 2-Layer Sandwich HIT family, subunit A Rotavirus NSP2 fragment, C-terminal domain 2r7pA02
3.90.1400.10 Alpha Beta Alpha-Beta Complex Rotavirus NSP2 fragment, N-terminal domain Rotavirus NSP2 fragment, N-terminal domain 2r7pA01
2R7CA 2GU0A 2R7JA 2R8FA 4G0AA 2R7PA 1L9VA 4G0JA
chains in the Genus database with same CATH superfamily
3OMFA 5BV3A 2R7PA 3BL9A 3ANOA 2OIKA 3RHNA 5IPEA 4I5WA 1HXPA 3SPLA 4YKLB 5EMTA 5IN3A 3FITA 3O0MA 4INCA 2Q4LA 5I2EA 1FHIA 3IMIA 4QDVA 2GU0A 3OHEA 3BLAA 4NJZA 5I2FA 4RHNA 2R8FA 2FITA 4NDHA 2LJWA 1KPEA 3I4SA 6FITA 4XBAA 1FITA 1ZWJA 4NJXA 5IPBA 1Y23A 3R6FA 4NDGA 4NK0A 1GUQA 4EQHA 4NJYA 3TW2A 5IPCA 4ZKLA 2EO4A 4EGUA 1KPBA 4EQGA 3OXKA 2Q4HA 1KPAA 1VLRA 2H39A 5RHNA 4NDFA 3KSVA 4INIA 4FITA 4I5TA 3P0TA 3SPDA 3QGZA 1ST4A 2R7JA 3O1ZA 1KPCA 1AV5A 1ST0A 3N1SA 3SP4A 3NRDA 2R7CA 3SZQA 1GUPA 5FITA 3I24A 4QEBA 4G0JA 1XMMA 1XMLA 5CS2A 4QDEA 3L7XA 1HXQA 3WO5A 3O1XA 1EMSA 3BL7A 4I5VA 5ED3A 4ZKVA 5ED6A 4G0AA 1KPFA 5IPDA 6RHNA 1L9VA 2POFA 3LB5A 3O1CA 4ZGLA 1RZYA 2FHIA 3OJ7A 4NDIA 3N1TA 4EQEA 1Z84A
chains in the Genus database with same CATH topology
2R7CA 2GU0A 2R7JA 2R8FA 4G0AA 2R7PA 1L9VA 4G0JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R7C A;  2GU0 A;  2R7J A;  2R8F A;  4G0A A;  2R7P A;  1L9V A;  4G0J A; 
#chains in the Genus database with same CATH topology
 3OMF A;  5BV3 A;  2R7P A;  3BL9 A;  3ANO A;  2OIK A;  3RHN A;  5IPE A;  4I5W A;  1HXP A;  3SPL A;  4YKL B;  5EMT A;  5IN3 A;  3FIT A;  3O0M A;  4INC A;  2Q4L A;  5I2E A;  1FHI A;  3IMI A;  4QDV A;  2GU0 A;  3OHE A;  3BLA A;  4NJZ A;  5I2F A;  4RHN A;  2R8F A;  2FIT A;  4NDH A;  2LJW A;  1KPE A;  3I4S A;  6FIT A;  4XBA A;  1FIT A;  1ZWJ A;  4NJX A;  5IPB A;  1Y23 A;  3R6F A;  4NDG A;  4NK0 A;  1GUQ A;  4EQH A;  4NJY A;  3TW2 A;  5IPC A;  4ZKL A;  2EO4 A;  4EGU A;  1KPB A;  4EQG A;  3OXK A;  2Q4H A;  1KPA A;  1VLR A;  2H39 A;  5RHN A;  4NDF A;  3KSV A;  4INI A;  4FIT A;  4I5T A;  3P0T A;  3SPD A;  3QGZ A;  1ST4 A;  2R7J A;  3O1Z A;  1KPC A;  1AV5 A;  1ST0 A;  3N1S A;  3SP4 A;  3NRD A;  2R7C A;  3SZQ A;  1GUP A;  5FIT A;  3I24 A;  4QEB A;  4G0J A;  1XMM A;  1XML A;  5CS2 A;  4QDE A;  3L7X A;  1HXQ A;  3WO5 A;  3O1X A;  1EMS A;  3BL7 A;  4I5V A;  5ED3 A;  4ZKV A;  5ED6 A;  4G0A A;  1KPF A;  5IPD A;  6RHN A;  1L9V A;  2POF A;  3LB5 A;  3O1C A;  4ZGL A;  1RZY A;  2FHI A;  3OJ7 A;  4NDI A;  3N1T A;  4EQE A;  1Z84 A; 
#chains in the Genus database with same CATH homology
 2R7C A;  2GU0 A;  2R7J A;  2R8F A;  4G0A A;  2R7P A;  1L9V A;  4G0J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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