2R8FA

Crystal structure of h225a nsp2 and atp-gs complex
Total Genus 93
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
312
structure length
307
Chain Sequence
AELACFCYPHLENDSYKFIPFNNLAIKAMLTAKVDKKDMDKFYDSIIYGIAPPPQFKKRYNTNDNSRGMNFETIMFTKVAMLICEALNSLKVTQANVSNVLSRVVSIRHLENLVIRKENPQDILFHSKDLLLKSTLIAIGQSKEIETTITAEGGEIVFQNAAFTMWKLTYLEHQLMPILDQNFIEYKVTLNEDKPISDVHVKELVAELRWQYNKFAVITHGKGAYRIVKYSSVANHADRVYATFKSNVNDFNLLDQRIIWQNWYAFTSSMKQGNTLDVCKRLLFQKMKPEKNPFKGLSTDRKMDEVS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystallographic and Biochemical Analysis of Rotavirus NSP2 with Nucleotides Reveals a Nucleoside Diphosphate Kinase-Like Activity
pubmed doi rcsb
molecule tags Rna binding protein
source organism Simian 11 rotavirus (serotype 3 / strain sa11-ramig)
molecule keywords Non-structural RNA-binding protein 35
total genus 93
structure length 307
sequence length 312
ec nomenclature
pdb deposition date 2007-09-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02509 Rota_NS35 Rotavirus non-structural protein 35
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.20 Alpha Beta 2-Layer Sandwich HIT family, subunit A Rotavirus NSP2 fragment, C-terminal domain 2r8fA02
3.90.1400.10 Alpha Beta Alpha-Beta Complex Rotavirus NSP2 fragment, N-terminal domain Rotavirus NSP2 fragment, N-terminal domain 2r8fA01
2R7CA 4G0JA 2R8FA 2R7PA 1L9VA 2GU0A 2R7JA 4G0AA
chains in the Genus database with same CATH superfamily
4EGUA 3SPDA 6RHNA 3BL7A 4NJXA 4NDGA 3OHEA 4INCA 3O1ZA 1L9VA 5I2FA 3NRDA 3SPLA 1FITA 3RHNA 5IN3A 3LB5A 4EQHA 2R7JA 3N1TA 3BL9A 4NDHA 4QEBA 3ANOA 2FITA 5I2EA 1XMMA 5BV3A 1KPCA 2R8FA 3KSVA 3IMIA 4EQEA 3OMFA 4YKLB 1ST4A 2EO4A 1XMLA 3FITA 3O1XA 4G0JA 5RHNA 3TW2A 1KPAA 1GUPA 5ED6A 1GUQA 1Z84A 1Y23A 5FITA 2FHIA 4NDFA 4XBAA 5ED3A 4I5TA 1VLRA 2POFA 4NJYA 3SP4A 3P0TA 4ZKVA 2Q4HA 5IPDA 3SZQA 2OIKA 4NDIA 4RHNA 1ZWJA 4QDEA 4I5VA 1KPEA 4FITA 3I4SA 1HXPA 4QDVA 3WO5A 3I24A 3OJ7A 1EMSA 1KPBA 2Q4LA 2GU0A 3N1SA 1KPFA 2R7CA 3O1CA 1FHIA 3QGZA 4I5WA 2H39A 4ZKLA 5IPEA 4ZGLA 3R6FA 1ST0A 2LJWA 3O0MA 3BLAA 4EQGA 1HXQA 1AV5A 3OXKA 5EMTA 6FITA 1RZYA 4NK0A 5IPCA 3L7XA 5IPBA 4NJZA 4INIA 2R7PA 5CS2A 4G0AA
chains in the Genus database with same CATH topology
2R7CA 4G0JA 2R8FA 2R7PA 1L9VA 2GU0A 2R7JA 4G0AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R7C A;  4G0J A;  2R8F A;  2R7P A;  1L9V A;  2GU0 A;  2R7J A;  4G0A A; 
#chains in the Genus database with same CATH topology
 4EGU A;  3SPD A;  6RHN A;  3BL7 A;  4NJX A;  4NDG A;  3OHE A;  4INC A;  3O1Z A;  1L9V A;  5I2F A;  3NRD A;  3SPL A;  1FIT A;  3RHN A;  5IN3 A;  3LB5 A;  4EQH A;  2R7J A;  3N1T A;  3BL9 A;  4NDH A;  4QEB A;  3ANO A;  2FIT A;  5I2E A;  1XMM A;  5BV3 A;  1KPC A;  2R8F A;  3KSV A;  3IMI A;  4EQE A;  3OMF A;  4YKL B;  1ST4 A;  2EO4 A;  1XML A;  3FIT A;  3O1X A;  4G0J A;  5RHN A;  3TW2 A;  1KPA A;  1GUP A;  5ED6 A;  1GUQ A;  1Z84 A;  1Y23 A;  5FIT A;  2FHI A;  4NDF A;  4XBA A;  5ED3 A;  4I5T A;  1VLR A;  2POF A;  4NJY A;  3SP4 A;  3P0T A;  4ZKV A;  2Q4H A;  5IPD A;  3SZQ A;  2OIK A;  4NDI A;  4RHN A;  1ZWJ A;  4QDE A;  4I5V A;  1KPE A;  4FIT A;  3I4S A;  1HXP A;  4QDV A;  3WO5 A;  3I24 A;  3OJ7 A;  1EMS A;  1KPB A;  2Q4L A;  2GU0 A;  3N1S A;  1KPF A;  2R7C A;  3O1C A;  1FHI A;  3QGZ A;  4I5W A;  2H39 A;  4ZKL A;  5IPE A;  4ZGL A;  3R6F A;  1ST0 A;  2LJW A;  3O0M A;  3BLA A;  4EQG A;  1HXQ A;  1AV5 A;  3OXK A;  5EMT A;  6FIT A;  1RZY A;  4NK0 A;  5IPC A;  3L7X A;  5IPB A;  4NJZ A;  4INI A;  2R7P A;  5CS2 A;  4G0A A; 
#chains in the Genus database with same CATH homology
 2R7C A;  4G0J A;  2R8F A;  2R7P A;  1L9V A;  2GU0 A;  2R7J A;  4G0A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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