2ZMXB

Crystal structure of the met1-form of the copper-bound tyrosinase in complex with a caddie protein from streptomyces castaneoglobisporus obtained by soaking in cupric sulfate solution for 36 hours
Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
83
structure length
77
Chain Sequence
AAPESFDEVYKGRRIQGRPAHEHGGGYEVFVDGVQLHVMRNADGSWISVVSHYDPVPTPRAAARAAVDELQGAPLLP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
S1 (45-49)S2 (52-58)EMPTYS3 (72-76)TIV1 (48-51)Updating...
connected with : NaN
molecule tags Oxidoreductase/metal transport
source organism Streptomyces castaneoglobisporus
publication title Crystallographic Evidence That the Dinuclear Copper Center of Tyrosinase Is Flexible during Catalysis
pubmed doi rcsb
molecule keywords Tyrosinase
total genus 17
structure length 77
sequence length 83
ec nomenclature
pdb deposition date 2008-04-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF06236 MelC1 Tyrosinase co-factor MelC1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1880.10 Alpha Beta 2-Layer Sandwich protein ne1242 fold protein ne1242 domain like 2zmxB01
3AWSB 3AWZB 2ZMYB 3AWTB 1WX2B 1WX4B 2ZMXB 2ZMZB 3AWWB 2AHKB 2ZWFB 3AX0B 2ZWDB 2JV8A 1WX5B 3AWXB 2ZWEB 2AHLB 3AWUB 1WXCB 2ZWGB 3AWVB 3AWYB
chains in the Genus database with same CATH superfamily
3AWSB 3AWZB 2ZMYB 3AWTB 4NBDA 1WX2B 1WX4B 1WW9A 1Z01A 2ZMXB 4NBGA 1Z03A 4NB9A 2DE7A 3GCFA 4NBHA 2ZMZB 4NBFA 3VMIA 3AWWB 2AHKB 3GKQA 2ZWFB 3VMHA 3AX0B 2ZWDB 2JV8A 2DE6A 4NBCA 1Z02A 1WX5B 3AWXB 4NBAA 3VMGA 2ZWEB 2AHLB 2DE5A 3AWUB 1WXCB 4NB8A 2ZWGB 3AWVB 4NBEA 4NBBA 3AWYB
chains in the Genus database with same CATH topology
3AWSB 3AWZB 2ZMYB 3AWTB 1WX2B 1WX4B 2ZMXB 2ZMZB 3AWWB 2AHKB 2ZWFB 3AX0B 2ZWDB 2JV8A 1WX5B 3AWXB 2ZWEB 2AHLB 3AWUB 1WXCB 2ZWGB 3AWVB 3AWYB
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3AWS B;  3AWZ B;  2ZMY B;  3AWT B;  1WX2 B;  1WX4 B;  2ZMX B;  2ZMZ B;  3AWW B;  2AHK B;  2ZWF B;  3AX0 B;  2ZWD B;  2JV8 A;  1WX5 B;  3AWX B;  2ZWE B;  2AHL B;  3AWU B;  1WXC B;  2ZWG B;  3AWV B;  3AWY B; 
#chains in the Genus database with same CATH topology
 3AWS B;  3AWZ B;  2ZMY B;  3AWT B;  4NBD A;  1WX2 B;  1WX4 B;  1WW9 A;  1Z01 A;  2ZMX B;  4NBG A;  1Z03 A;  4NB9 A;  2DE7 A;  3GCF A;  4NBH A;  2ZMZ B;  4NBF A;  3VMI A;  3AWW B;  2AHK B;  3GKQ A;  2ZWF B;  3VMH A;  3AX0 B;  2ZWD B;  2JV8 A;  2DE6 A;  4NBC A;  1Z02 A;  1WX5 B;  3AWX B;  4NBA A;  3VMG A;  2ZWE B;  2AHL B;  2DE5 A;  3AWU B;  1WXC B;  4NB8 A;  2ZWG B;  3AWV B;  4NBE A;  4NBB A;  3AWY B; 
#chains in the Genus database with same CATH homology
 3AWS B;  3AWZ B;  2ZMY B;  3AWT B;  1WX2 B;  1WX4 B;  2ZMX B;  2ZMZ B;  3AWW B;  2AHK B;  2ZWF B;  3AX0 B;  2ZWD B;  2JV8 A;  1WX5 B;  3AWX B;  2ZWE B;  2AHL B;  3AWU B;  1WXC B;  2ZWG B;  3AWV B;  3AWY B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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