2ZMZB

The 1.37-a crystal structure of the hydroxylamine-induced deoxy-form of the copper-bound tyrosinase in complex with a caddie protein from streptomyces castaneoglobisporus
Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
85
structure length
79
Chain Sequence
AAPESFDEVYKGRRIQGRPAHEHGGGYEVFVDGVQLHVMRNADGSWISVVSHYDPVPTPRAAARAAVDELQGAPLLPFP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYS3 (72-76)S1 (45-49)S2 (52-58)TVIII1 (70-73)TIV1 (48-51)Updating...
connected with : NaN
molecule tags Oxidoreductase/metal transport
source organism Streptomyces castaneoglobisporus
publication title X-Ray Snapshots of a Hydroxylation Mechanism of Tyrosinase
rcsb
molecule keywords Tyrosinase
total genus 16
structure length 79
sequence length 85
ec nomenclature
pdb deposition date 2008-04-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF06236 MelC1 Tyrosinase co-factor MelC1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1880.10 Alpha Beta 2-Layer Sandwich protein ne1242 fold protein ne1242 domain like 2zmzB01
3AWSB 1WX4B 2AHKB 2ZMYB 2ZWEB 3AX0B 3AWZB 2AHLB 1WXCB 3AWTB 1WX2B 3AWXB 3AWYB 2JV8A 2ZMXB 2ZWDB 1WX5B 2ZMZB 2ZWFB 3AWVB 3AWWB 3AWUB 2ZWGB
chains in the Genus database with same CATH superfamily
1Z02A 4NBGA 4NBDA 3AWSB 4NBBA 3VMHA 4NBCA 1WX4B 3VMGA 4NB8A 4NB9A 2AHKB 1Z01A 2ZMYB 4NBEA 3VMIA 2ZWEB 4NBHA 3GKQA 3GCFA 3AX0B 3AWZB 4NBAA 2AHLB 1WW9A 1WXCB 3AWTB 1WX2B 2DE5A 3AWXB 1Z03A 3AWYB 2JV8A 2ZMXB 2ZWDB 1WX5B 2ZMZB 2ZWFB 2DE7A 3AWVB 2DE6A 3AWWB 3AWUB 4NBFA 2ZWGB
chains in the Genus database with same CATH topology
3AWSB 1WX4B 2AHKB 2ZMYB 2ZWEB 3AX0B 3AWZB 2AHLB 1WXCB 3AWTB 1WX2B 3AWXB 3AWYB 2JV8A 2ZMXB 2ZWDB 1WX5B 2ZMZB 2ZWFB 3AWVB 3AWWB 3AWUB 2ZWGB
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3AWS B;  1WX4 B;  2AHK B;  2ZMY B;  2ZWE B;  3AX0 B;  3AWZ B;  2AHL B;  1WXC B;  3AWT B;  1WX2 B;  3AWX B;  3AWY B;  2JV8 A;  2ZMX B;  2ZWD B;  1WX5 B;  2ZMZ B;  2ZWF B;  3AWV B;  3AWW B;  3AWU B;  2ZWG B; 
#chains in the Genus database with same CATH topology
 1Z02 A;  4NBG A;  4NBD A;  3AWS B;  4NBB A;  3VMH A;  4NBC A;  1WX4 B;  3VMG A;  4NB8 A;  4NB9 A;  2AHK B;  1Z01 A;  2ZMY B;  4NBE A;  3VMI A;  2ZWE B;  4NBH A;  3GKQ A;  3GCF A;  3AX0 B;  3AWZ B;  4NBA A;  2AHL B;  1WW9 A;  1WXC B;  3AWT B;  1WX2 B;  2DE5 A;  3AWX B;  1Z03 A;  3AWY B;  2JV8 A;  2ZMX B;  2ZWD B;  1WX5 B;  2ZMZ B;  2ZWF B;  2DE7 A;  3AWV B;  2DE6 A;  3AWW B;  3AWU B;  4NBF A;  2ZWG B; 
#chains in the Genus database with same CATH homology
 3AWS B;  1WX4 B;  2AHK B;  2ZMY B;  2ZWE B;  3AX0 B;  3AWZ B;  2AHL B;  1WXC B;  3AWT B;  1WX2 B;  3AWX B;  3AWY B;  2JV8 A;  2ZMX B;  2ZWD B;  1WX5 B;  2ZMZ B;  2ZWF B;  3AWV B;  3AWW B;  3AWU B;  2ZWG B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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