2ZWDB

Crystal structure of the copper-bound tyrosinase in complex with a caddie protein from streptomyces castaneoglobisporus obtained by soaking the deoxy-form crystal in dioxygen-saturated solution for 5 minutes
Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
84
structure length
73
Chain Sequence
AAPESFDEVYKGRRIQGRPAGYEVFVDGVQLHVMRNADGSWISVVSHYDPVPTPRAAARAAVDELQGAPLLPF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYTIV1 (48-51)S1 (45-49)S2 (52-57)TIV2 (58-72)Updating...
connected with : NaN
molecule tags Oxidoreductase/metal transport
source organism Streptomyces castaneoglobisporus
publication title Crystallographic evidence of drastic movement of a copper ion toward the substrate tyrosine for starting hydroxylation reaction of tyrosinase
rcsb
molecule keywords Tyrosinase
total genus 15
structure length 73
sequence length 84
ec nomenclature
pdb deposition date 2008-12-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF06236 MelC1 Tyrosinase co-factor MelC1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1880.10 Alpha Beta 2-Layer Sandwich protein ne1242 fold protein ne1242 domain like 2zwdB01
3AWXB 3AX0B 3AWYB 2ZMZB 2ZMYB 2JV8A 2ZWDB 2AHKB 1WXCB 3AWUB 3AWTB 2ZWFB 1WX5B 2AHLB 1WX4B 3AWZB 1WX2B 2ZMXB 3AWSB 3AWWB 2ZWEB 2ZWGB 3AWVB
chains in the Genus database with same CATH superfamily
3VMHA 4NBBA 3AWXB 4NB8A 3GCFA 3AX0B 4NBGA 3AWYB 2ZMZB 4NBCA 2ZMYB 2JV8A 2DE5A 2AHKB 2ZWDB 1WW9A 1WXCB 3AWUB 3AWTB 2ZWFB 4NBHA 1WX5B 1Z01A 4NBAA 4NBDA 2DE6A 2AHLB 3VMGA 1WX4B 4NBEA 3AWZB 2DE7A 1Z02A 1WX2B 2ZMXB 3AWSB 3GKQA 4NBFA 3AWWB 1Z03A 2ZWEB 2ZWGB 3AWVB 3VMIA 4NB9A
chains in the Genus database with same CATH topology
3AWXB 3AX0B 3AWYB 2ZMZB 2ZMYB 2JV8A 2ZWDB 2AHKB 1WXCB 3AWUB 3AWTB 2ZWFB 1WX5B 2AHLB 1WX4B 3AWZB 1WX2B 2ZMXB 3AWSB 3AWWB 2ZWEB 2ZWGB 3AWVB
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3AWX B;  3AX0 B;  3AWY B;  2ZMZ B;  2ZMY B;  2JV8 A;  2ZWD B;  2AHK B;  1WXC B;  3AWU B;  3AWT B;  2ZWF B;  1WX5 B;  2AHL B;  1WX4 B;  3AWZ B;  1WX2 B;  2ZMX B;  3AWS B;  3AWW B;  2ZWE B;  2ZWG B;  3AWV B; 
#chains in the Genus database with same CATH topology
 3VMH A;  4NBB A;  3AWX B;  4NB8 A;  3GCF A;  3AX0 B;  4NBG A;  3AWY B;  2ZMZ B;  4NBC A;  2ZMY B;  2JV8 A;  2DE5 A;  2AHK B;  2ZWD B;  1WW9 A;  1WXC B;  3AWU B;  3AWT B;  2ZWF B;  4NBH A;  1WX5 B;  1Z01 A;  4NBA A;  4NBD A;  2DE6 A;  2AHL B;  3VMG A;  1WX4 B;  4NBE A;  3AWZ B;  2DE7 A;  1Z02 A;  1WX2 B;  2ZMX B;  3AWS B;  3GKQ A;  4NBF A;  3AWW B;  1Z03 A;  2ZWE B;  2ZWG B;  3AWV B;  3VMI A;  4NB9 A; 
#chains in the Genus database with same CATH homology
 3AWX B;  3AX0 B;  3AWY B;  2ZMZ B;  2ZMY B;  2JV8 A;  2ZWD B;  2AHK B;  1WXC B;  3AWU B;  3AWT B;  2ZWF B;  1WX5 B;  2AHL B;  1WX4 B;  3AWZ B;  1WX2 B;  2ZMX B;  3AWS B;  3AWW B;  2ZWE B;  2ZWG B;  3AWV B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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