2ZWEB

Crystal structure of the copper-bound tyrosinase in complex with a caddie protein from streptomyces castaneoglobisporus obtained by soaking the deoxy-form crystal in dioxygen-saturated solution for 40 minutes
Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
84
structure length
77
Chain Sequence
AAPESFDEVYKGRRIQGRPAHEHGGGYEVFVDGVQLHVMRNADGSWISVVSHDPVPTPRAAARAAVDELQGAPLLPF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
S1 (45-49)S2 (52-58)EMPTYS3 (72-76)TIV1 (48-51)Updating...
connected with : NaN
molecule tags Oxidoreductase/metal transport
source organism Streptomyces castaneoglobisporus
publication title Crystallographic evidence of drastic movement of a copper ion toward the substrate tyrosine for starting hydroxylation reaction of tyrosinase
rcsb
molecule keywords Tyrosinase
total genus 16
structure length 77
sequence length 84
ec nomenclature
pdb deposition date 2008-12-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF06236 MelC1 Tyrosinase co-factor MelC1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1880.10 Alpha Beta 2-Layer Sandwich protein ne1242 fold protein ne1242 domain like 2zweB01
1WX5B 2ZWFB 2ZWGB 3AX0B 3AWXB 3AWUB 2ZMZB 1WX4B 2AHLB 2ZWDB 3AWVB 1WXCB 3AWYB 2ZMXB 3AWSB 3AWZB 3AWTB 1WX2B 2JV8A 2AHKB 3AWWB 2ZMYB 2ZWEB
chains in the Genus database with same CATH superfamily
1WX5B 2ZWFB 2ZWGB 3AX0B 3AWXB 2DE6A 3AWUB 2ZMZB 1WX4B 2AHLB 2ZWDB 3AWVB 3VMIA 1WW9A 1WXCB 3VMGA 4NBEA 3AWYB 2ZMXB 2DE5A 4NB8A 4NBCA 3AWSB 1Z01A 1Z02A 3AWZB 4NBHA 3AWTB 4NBFA 1WX2B 3GKQA 4NBDA 2JV8A 3VMHA 4NBAA 1Z03A 2AHKB 3AWWB 4NBGA 4NB9A 2DE7A 2ZMYB 4NBBA 2ZWEB 3GCFA
chains in the Genus database with same CATH topology
1WX5B 2ZWFB 2ZWGB 3AX0B 3AWXB 3AWUB 2ZMZB 1WX4B 2AHLB 2ZWDB 3AWVB 1WXCB 3AWYB 2ZMXB 3AWSB 3AWZB 3AWTB 1WX2B 2JV8A 2AHKB 3AWWB 2ZMYB 2ZWEB
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1WX5 B;  2ZWF B;  2ZWG B;  3AX0 B;  3AWX B;  3AWU B;  2ZMZ B;  1WX4 B;  2AHL B;  2ZWD B;  3AWV B;  1WXC B;  3AWY B;  2ZMX B;  3AWS B;  3AWZ B;  3AWT B;  1WX2 B;  2JV8 A;  2AHK B;  3AWW B;  2ZMY B;  2ZWE B; 
#chains in the Genus database with same CATH topology
 1WX5 B;  2ZWF B;  2ZWG B;  3AX0 B;  3AWX B;  2DE6 A;  3AWU B;  2ZMZ B;  1WX4 B;  2AHL B;  2ZWD B;  3AWV B;  3VMI A;  1WW9 A;  1WXC B;  3VMG A;  4NBE A;  3AWY B;  2ZMX B;  2DE5 A;  4NB8 A;  4NBC A;  3AWS B;  1Z01 A;  1Z02 A;  3AWZ B;  4NBH A;  3AWT B;  4NBF A;  1WX2 B;  3GKQ A;  4NBD A;  2JV8 A;  3VMH A;  4NBA A;  1Z03 A;  2AHK B;  3AWW B;  4NBG A;  4NB9 A;  2DE7 A;  2ZMY B;  4NBB A;  2ZWE B;  3GCF A; 
#chains in the Genus database with same CATH homology
 1WX5 B;  2ZWF B;  2ZWG B;  3AX0 B;  3AWX B;  3AWU B;  2ZMZ B;  1WX4 B;  2AHL B;  2ZWD B;  3AWV B;  1WXC B;  3AWY B;  2ZMX B;  3AWS B;  3AWZ B;  3AWT B;  1WX2 B;  2JV8 A;  2AHK B;  3AWW B;  2ZMY B;  2ZWE B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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