2ZWFB

Crystal structure of the copper-bound tyrosinase in complex with a caddie protein from streptomyces castaneoglobisporus obtained by soaking the deoxy-form crystal in dioxygen-saturated solution for 80 minutes
Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
83
structure length
71
Chain Sequence
AAPESFDEVYKGRRIQGRPAGYEVFVDGVQLHVMRNADGSWISVVSHDPVPTPRAAARAAVDELQGAPLLP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYTIV1 (48-51)S1 (45-49)S2 (52-57)TIV2 (58-72)Updating...
connected with : NaN
molecule tags Oxidoreductase/metal transport
source organism Streptomyces castaneoglobisporus
publication title Crystallographic evidence of drastic movement of a copper ion toward the substrate tyrosine for starting hydroxylation reaction of tyrosinase
rcsb
molecule keywords Tyrosinase
total genus 15
structure length 71
sequence length 83
ec nomenclature
pdb deposition date 2008-12-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF06236 MelC1 Tyrosinase co-factor MelC1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1880.10 Alpha Beta 2-Layer Sandwich protein ne1242 fold protein ne1242 domain like 2zwfB01
2ZWGB 3AWSB 3AWYB 1WX5B 2JV8A 1WX4B 1WX2B 3AWWB 2ZWEB 3AWUB 3AWVB 2ZWFB 2ZMYB 3AWTB 2ZWDB 2AHKB 1WXCB 3AWZB 2ZMXB 2AHLB 3AX0B 3AWXB 2ZMZB
chains in the Genus database with same CATH superfamily
4NBAA 2DE7A 2ZWGB 3AWSB 1WW9A 4NBBA 3AWYB 2DE5A 3VMIA 4NBCA 4NBHA 1Z03A 4NB8A 2DE6A 1WX5B 2JV8A 1WX4B 3AWXB 1WX2B 4NBEA 3AWWB 3GKQA 3AWUB 3AWVB 1Z02A 2ZWFB 2ZMYB 3GCFA 4NBGA 3AWTB 2ZWDB 4NBFA 4NBDA 4NB9A 3VMGA 2AHKB 1WXCB 3AWZB 3VMHA 2ZMXB 1Z01A 2AHLB 3AX0B 2ZWEB 2ZMZB
chains in the Genus database with same CATH topology
2ZWGB 3AWSB 3AWYB 1WX5B 2JV8A 1WX4B 1WX2B 3AWWB 2ZWEB 3AWUB 3AWVB 2ZWFB 2ZMYB 3AWTB 2ZWDB 2AHKB 1WXCB 3AWZB 2ZMXB 2AHLB 3AX0B 3AWXB 2ZMZB
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2ZWG B;  3AWS B;  3AWY B;  1WX5 B;  2JV8 A;  1WX4 B;  1WX2 B;  3AWW B;  2ZWE B;  3AWU B;  3AWV B;  2ZWF B;  2ZMY B;  3AWT B;  2ZWD B;  2AHK B;  1WXC B;  3AWZ B;  2ZMX B;  2AHL B;  3AX0 B;  3AWX B;  2ZMZ B; 
#chains in the Genus database with same CATH topology
 4NBA A;  2DE7 A;  2ZWG B;  3AWS B;  1WW9 A;  4NBB A;  3AWY B;  2DE5 A;  3VMI A;  4NBC A;  4NBH A;  1Z03 A;  4NB8 A;  2DE6 A;  1WX5 B;  2JV8 A;  1WX4 B;  3AWX B;  1WX2 B;  4NBE A;  3AWW B;  3GKQ A;  3AWU B;  3AWV B;  1Z02 A;  2ZWF B;  2ZMY B;  3GCF A;  4NBG A;  3AWT B;  2ZWD B;  4NBF A;  4NBD A;  4NB9 A;  3VMG A;  2AHK B;  1WXC B;  3AWZ B;  3VMH A;  2ZMX B;  1Z01 A;  2AHL B;  3AX0 B;  2ZWE B;  2ZMZ B; 
#chains in the Genus database with same CATH homology
 2ZWG B;  3AWS B;  3AWY B;  1WX5 B;  2JV8 A;  1WX4 B;  1WX2 B;  3AWW B;  2ZWE B;  3AWU B;  3AWV B;  2ZWF B;  2ZMY B;  3AWT B;  2ZWD B;  2AHK B;  1WXC B;  3AWZ B;  2ZMX B;  2AHL B;  3AX0 B;  3AWX B;  2ZMZ B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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