3I24A

Crystal structure of a hit family hydrolase protein from vibrio fischeri. northeast structural genomics consortium target id vfr176
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
143
structure length
143
Chain Sequence
AFQLHPRLQQDCIVLGNLPLCKVLLIKEDIGPWLILVPRIEELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIGALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGVIRAQSSQTQLVDLLRDKLSNISGFKRLEH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of a HIT family hydrolase protein from Vibrio fischeri. Northeast Structural Genomics Consortium target id VfR176
rcsb
molecule tags Hydrolase
source organism Vibrio fischeri es114
molecule keywords HIT family hydrolase
total genus 39
structure length 143
sequence length 143
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01230 HIT HIT domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.10 Alpha Beta 2-Layer Sandwich HIT family, subunit A HIT-like 3i24A00
1XMLA 3FITA 1Z84A 3NRDA 1XMMA 4NDIA 5BV3A 4NK0A 2EO4A 3L7XA 3OJ7A 4INCA 3TW2A 2H39A 3OMFA 3I4SA 1ST0A 4NJXA 1Y23A 3BLAA 1KPAA 4NDHA 3O1CA 1RZYA 3OHEA 4EQEA 2Q4LA 5CS2A 1KPEA 3P0TA 4NDGA 3QGZA 1HXPA 4EGUA 2FITA 4EQHA 1FHIA 3SPLA 3SPDA 1GUPA 4INIA 3ANOA 5EMTA 3SP4A 5I2FA 3O1XA 5RHNA 4FITA 1KPCA 3WO5A 5ED3A 2Q4HA 5ED6A 4NJYA 5I2EA 5IPBA 3RHNA 3O0MA 4XBAA 3BL9A 6FITA 3BL7A 4YKLB 1KPFA 3IMIA 4QDEA 3N1SA 4NDFA 3SZQA 1HXQA 3LB5A 5FITA 1KPBA 2FHIA 3KSVA 4ZKVA 1ST4A 5IPEA 1AV5A 5IPCA 3O1ZA 4QEBA 5IN3A 1EMSA 1VLRA 6RHNA 4EQGA 4NJZA 4ZKLA 4ZGLA 3I24A 1GUQA 4RHNA 5IPDA 2OIKA 1ZWJA 3OXKA 1FITA 3R6FA 4QDVA 3N1TA
chains in the Genus database with same CATH superfamily
1XMLA 3FITA 1Z84A 3NRDA 1XMMA 4NDIA 5BV3A 4NK0A 2EO4A 3L7XA 3OJ7A 4INCA 3TW2A 2H39A 3OMFA 2POFA 3I4SA 1ST0A 4NJXA 1Y23A 3BLAA 1KPAA 4NDHA 3O1CA 1RZYA 2R7JA 3OHEA 4EQEA 2Q4LA 5CS2A 1KPEA 3P0TA 4NDGA 3QGZA 1HXPA 4EGUA 2FITA 4EQHA 1FHIA 3SPLA 3SPDA 1GUPA 4INIA 3ANOA 5EMTA 3SP4A 5I2FA 3O1XA 5RHNA 4FITA 4I5TA 1KPCA 3WO5A 5ED3A 2Q4HA 5ED6A 2R7PA 4NJYA 5I2EA 5IPBA 3RHNA 2R7CA 3O0MA 4XBAA 2GU0A 3BL9A 6FITA 3BL7A 4YKLB 1KPFA 3IMIA 4QDEA 3N1SA 4NDFA 4G0JA 3SZQA 1HXQA 3LB5A 5FITA 1KPBA 2FHIA 4G0AA 4I5VA 3KSVA 4ZKVA 1ST4A 5IPEA 1AV5A 5IPCA 3O1ZA 4QEBA 5IN3A 1EMSA 1VLRA 6RHNA 4I5WA 4EQGA 4NJZA 4ZKLA 4ZGLA 2LJWA 3I24A 1GUQA 4RHNA 5IPDA 2R8FA 2OIKA 1L9VA 1ZWJA 3OXKA 1FITA 3R6FA 4QDVA 3N1TA
chains in the Genus database with same CATH topology
1XMLA 3FITA 1Z84A 3NRDA 1XMMA 4NDIA 5BV3A 4NK0A 2EO4A 3L7XA 3OJ7A 4INCA 3TW2A 2H39A 3OMFA 3I4SA 1ST0A 4NJXA 1Y23A 3BLAA 1KPAA 4NDHA 3O1CA 1RZYA 3OHEA 4EQEA 2Q4LA 5CS2A 1KPEA 3P0TA 4NDGA 3QGZA 1HXPA 4EGUA 2FITA 4EQHA 1FHIA 3SPLA 3SPDA 1GUPA 4INIA 3ANOA 5EMTA 3SP4A 5I2FA 3O1XA 5RHNA 4FITA 1KPCA 3WO5A 5ED3A 2Q4HA 5ED6A 4NJYA 5I2EA 5IPBA 3RHNA 3O0MA 4XBAA 3BL9A 6FITA 3BL7A 4YKLB 1KPFA 3IMIA 4QDEA 3N1SA 4NDFA 3SZQA 1HXQA 3LB5A 5FITA 1KPBA 2FHIA 3KSVA 4ZKVA 1ST4A 5IPEA 1AV5A 5IPCA 3O1ZA 4QEBA 5IN3A 1EMSA 1VLRA 6RHNA 4EQGA 4NJZA 4ZKLA 4ZGLA 3I24A 1GUQA 4RHNA 5IPDA 2OIKA 1ZWJA 3OXKA 1FITA 3R6FA 4QDVA 3N1TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XML A;  3FIT A;  1Z84 A;  3NRD A;  1XMM A;  4NDI A;  5BV3 A;  4NK0 A;  2EO4 A;  3L7X A;  3OJ7 A;  4INC A;  3TW2 A;  2H39 A;  3OMF A;  3I4S A;  1ST0 A;  4NJX A;  1Y23 A;  3BLA A;  1KPA A;  4NDH A;  3O1C A;  1RZY A;  3OHE A;  4EQE A;  2Q4L A;  5CS2 A;  1KPE A;  3P0T A;  4NDG A;  3QGZ A;  1HXP A;  4EGU A;  2FIT A;  4EQH A;  1FHI A;  3SPL A;  3SPD A;  1GUP A;  4INI A;  3ANO A;  5EMT A;  3SP4 A;  5I2F A;  3O1X A;  5RHN A;  4FIT A;  1KPC A;  3WO5 A;  5ED3 A;  2Q4H A;  5ED6 A;  4NJY A;  5I2E A;  5IPB A;  3RHN A;  3O0M A;  4XBA A;  3BL9 A;  6FIT A;  3BL7 A;  4YKL B;  1KPF A;  3IMI A;  4QDE A;  3N1S A;  4NDF A;  3SZQ A;  1HXQ A;  3LB5 A;  5FIT A;  1KPB A;  2FHI A;  3KSV A;  4ZKV A;  1ST4 A;  5IPE A;  1AV5 A;  5IPC A;  3O1Z A;  4QEB A;  5IN3 A;  1EMS A;  1VLR A;  6RHN A;  4EQG A;  4NJZ A;  4ZKL A;  4ZGL A;  3I24 A;  1GUQ A;  4RHN A;  5IPD A;  2OIK A;  1ZWJ A;  3OXK A;  1FIT A;  3R6F A;  4QDV A;  3N1T A; 
#chains in the Genus database with same CATH topology
 1XML A;  3FIT A;  1Z84 A;  3NRD A;  1XMM A;  4NDI A;  5BV3 A;  4NK0 A;  2EO4 A;  3L7X A;  3OJ7 A;  4INC A;  3TW2 A;  2H39 A;  3OMF A;  2POF A;  3I4S A;  1ST0 A;  4NJX A;  1Y23 A;  3BLA A;  1KPA A;  4NDH A;  3O1C A;  1RZY A;  2R7J A;  3OHE A;  4EQE A;  2Q4L A;  5CS2 A;  1KPE A;  3P0T A;  4NDG A;  3QGZ A;  1HXP A;  4EGU A;  2FIT A;  4EQH A;  1FHI A;  3SPL A;  3SPD A;  1GUP A;  4INI A;  3ANO A;  5EMT A;  3SP4 A;  5I2F A;  3O1X A;  5RHN A;  4FIT A;  4I5T A;  1KPC A;  3WO5 A;  5ED3 A;  2Q4H A;  5ED6 A;  2R7P A;  4NJY A;  5I2E A;  5IPB A;  3RHN A;  2R7C A;  3O0M A;  4XBA A;  2GU0 A;  3BL9 A;  6FIT A;  3BL7 A;  4YKL B;  1KPF A;  3IMI A;  4QDE A;  3N1S A;  4NDF A;  4G0J A;  3SZQ A;  1HXQ A;  3LB5 A;  5FIT A;  1KPB A;  2FHI A;  4G0A A;  4I5V A;  3KSV A;  4ZKV A;  1ST4 A;  5IPE A;  1AV5 A;  5IPC A;  3O1Z A;  4QEB A;  5IN3 A;  1EMS A;  1VLR A;  6RHN A;  4I5W A;  4EQG A;  4NJZ A;  4ZKL A;  4ZGL A;  2LJW A;  3I24 A;  1GUQ A;  4RHN A;  5IPD A;  2R8F A;  2OIK A;  1L9V A;  1ZWJ A;  3OXK A;  1FIT A;  3R6F A;  4QDV A;  3N1T A; 
#chains in the Genus database with same CATH homology
 1XML A;  3FIT A;  1Z84 A;  3NRD A;  1XMM A;  4NDI A;  5BV3 A;  4NK0 A;  2EO4 A;  3L7X A;  3OJ7 A;  4INC A;  3TW2 A;  2H39 A;  3OMF A;  3I4S A;  1ST0 A;  4NJX A;  1Y23 A;  3BLA A;  1KPA A;  4NDH A;  3O1C A;  1RZY A;  3OHE A;  4EQE A;  2Q4L A;  5CS2 A;  1KPE A;  3P0T A;  4NDG A;  3QGZ A;  1HXP A;  4EGU A;  2FIT A;  4EQH A;  1FHI A;  3SPL A;  3SPD A;  1GUP A;  4INI A;  3ANO A;  5EMT A;  3SP4 A;  5I2F A;  3O1X A;  5RHN A;  4FIT A;  1KPC A;  3WO5 A;  5ED3 A;  2Q4H A;  5ED6 A;  4NJY A;  5I2E A;  5IPB A;  3RHN A;  3O0M A;  4XBA A;  3BL9 A;  6FIT A;  3BL7 A;  4YKL B;  1KPF A;  3IMI A;  4QDE A;  3N1S A;  4NDF A;  3SZQ A;  1HXQ A;  3LB5 A;  5FIT A;  1KPB A;  2FHI A;  3KSV A;  4ZKV A;  1ST4 A;  5IPE A;  1AV5 A;  5IPC A;  3O1Z A;  4QEB A;  5IN3 A;  1EMS A;  1VLR A;  6RHN A;  4EQG A;  4NJZ A;  4ZKL A;  4ZGL A;  3I24 A;  1GUQ A;  4RHN A;  5IPD A;  2OIK A;  1ZWJ A;  3OXK A;  1FIT A;  3R6F A;  4QDV A;  3N1T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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