3MHD | Genus

Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	16
sequence length	136
structure length	130
Chain Sequence	ETPTYPWRDAETGERLVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQCTFSASSSSSEQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 130 atoms

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130 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Immune system
source organism	Homo sapiens
publication title	Decoy Strategies: The Structure of TL1A:DcR3 Complex. pubmed doi rcsb
molecule keywords	Tumor necrosis factor receptor superfamily member 6B
total genus	16
structure length	130
sequence length	136
ec nomenclature
pdb deposition date	2010-04-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
D	PF00020	TNFR_c6	TNFR/NGFR cysteine-rich region

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.10.50.10	Mainly Beta	Ribbon	Tumor Necrosis Factor Receptor, subunit A; domain 2	Tumor Necrosis Factor Receptor, subunit A, domain 2	3mhdD01
3.10.360.30	Alpha Beta	Roll	Antimicrobial Peptide, Beta-defensin 2; Chain A	Antimicrobial Peptide, Beta-defensin 2; Chain A	3mhdD02

3TJEF 3ME2R 3U3TA 1JMAB 4I9XC 5IHLA 4MSVB 5L36B 4J6GC 2X10A 3QBQB 3MHDD 4KGGC 3X3FA 1NCFA 2H9GR 3IJ2X 3K51B 2UWIA 4FHQA 3U3QA 4OD2S 4BK5A 5DMJA 1EXTA 3QD6R 4MXWR 3FL7A 4KGQC 4E4DR 4GIQR 3U3SA 3U3PA 3URFZ 2AW2B 1TNRR 2HEVR 3ALQR 3BUKC 3THMF 4M4RA 3U3VA 3MI8D 4YN0A 5CIRE 1FT4A 4BK4A 5BNQR 1D4VA 1SG1X 4M4PA 2HEYR 1ZA3R 3ME4A 3MBWA 3WVTA 1DU3A 3QO4A 4N90R 1D0GR 4RSUD
chains in the Genus database with same CATH superfamily

3TJEF 3ME2R 2E4UA 3U3TA 1JMAB 4I9XC 5IHLA 4MSVB 5L36B 2MJKA 4J6GC 2X10A 3QBQB 2E4WA 3QO4A 3MHDD 4KGGC 3X3FA 1NCFA 2E4XA 2E4VA 2H9GR 2QR6A 2UWIA 3IJ2X 3K51B 4FHQA 3U3QA 1KJ6A 4OD2S 4BK5A 5DMJA 1FD3A 1EXTA 3QD6R 4MXWR 3FL7A 4KGQC 4E4DR 2LXOA 4GIQR 3U3SA 3U3PA 3URFZ 1FD4A 2AW2B 1TNRR 2HEVR 3ALQR 3BUKC 3THMF 1FQQA 4M4RA 3U3VA 3MI8D 4YN0A 5CIRE 1FT4A 4BK4A 5BNQR 1D4VA 1SG1X 4M4PA 2HEYR 1ZA3R 3ME4A 3MBWA 3WVTA 1DU3A 2E4YA 4N90R 1D0GR 4RSUD 2LWLA
chains in the Genus database with same CATH topology

3TJEF 3ME2R 3U3TA 1JMAB 4I9XC 5IHLA 4MSVB 5L36B 2MJKA 4J6GC 2X10A 3QBQB 3MHDD 4KGGC 3X3FA 1NCFA 2H9GR 3IJ2X 3K51B 2UWIA 4FHQA 3U3QA 1KJ6A 4OD2S 4BK5A 5DMJA 1FD3A 1EXTA 3QD6R 4MXWR 3FL7A 4KGQC 4E4DR 2LXOA 4GIQR 3U3SA 3U3PA 3URFZ 1FD4A 2AW2B 1TNRR 2HEVR 3ALQR 3BUKC 3THMF 1FQQA 4M4RA 3U3VA 3MI8D 4YN0A 5CIRE 1FT4A 4BK4A 5BNQR 1D4VA 1SG1X 4M4PA 2HEYR 1ZA3R 3ME4A 3MBWA 3WVTA 1DU3A 3QO4A 4N90R 1D0GR 4RSUD 2LWLA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3TJE F;  3ME2 R;  3U3T A;  1JMA B;  4I9X C;  5IHL A;  4MSV B;  5L36 B;  4J6G C;  2X10 A;  3QBQ B;  3MHD D;  4KGG C;  3X3F A;  1NCF A;  2H9G R;  3IJ2 X;  3K51 B;  2UWI A;  4FHQ A;  3U3Q A;  4OD2 S;  4BK5 A;  5DMJ A;  1EXT A;  3QD6 R;  4MXW R;  3FL7 A;  4KGQ C;  4E4D R;  4GIQ R;  3U3S A;  3U3P A;  3URF Z;  2AW2 B;  1TNR R;  2HEV R;  3ALQ R;  3BUK C;  3THM F;  4M4R A;  3U3V A;  3MI8 D;  4YN0 A;  5CIR E;  1FT4 A;  4BK4 A;  5BNQ R;  1D4V A;  1SG1 X;  4M4P A;  2HEY R;  1ZA3 R;  3ME4 A;  3MBW A;  3WVT A;  1DU3 A;  3QO4 A;  4N90 R;  1D0G R;  4RSU D; 
#chains in the Genus database with same CATH topology
 3TJE F;  3ME2 R;  2E4U A;  3U3T A;  1JMA B;  4I9X C;  5IHL A;  4MSV B;  5L36 B;  2MJK A;  4J6G C;  2X10 A;  3QBQ B;  2E4W A;  3QO4 A;  3MHD D;  4KGG C;  3X3F A;  1NCF A;  2E4X A;  2E4V A;  2H9G R;  2QR6 A;  2UWI A;  3IJ2 X;  3K51 B;  4FHQ A;  3U3Q A;  1KJ6 A;  4OD2 S;  4BK5 A;  5DMJ A;  1FD3 A;  1EXT A;  3QD6 R;  4MXW R;  3FL7 A;  4KGQ C;  4E4D R;  2LXO A;  4GIQ R;  3U3S A;  3U3P A;  3URF Z;  1FD4 A;  2AW2 B;  1TNR R;  2HEV R;  3ALQ R;  3BUK C;  3THM F;  1FQQ A;  4M4R A;  3U3V A;  3MI8 D;  4YN0 A;  5CIR E;  1FT4 A;  4BK4 A;  5BNQ R;  1D4V A;  1SG1 X;  4M4P A;  2HEY R;  1ZA3 R;  3ME4 A;  3MBW A;  3WVT A;  1DU3 A;  2E4Y A;  4N90 R;  1D0G R;  4RSU D;  2LWL A; 
#chains in the Genus database with same CATH homology
 3TJE F;  3ME2 R;  3U3T A;  1JMA B;  4I9X C;  5IHL A;  4MSV B;  5L36 B;  2MJK A;  4J6G C;  2X10 A;  3QBQ B;  3MHD D;  4KGG C;  3X3F A;  1NCF A;  2H9G R;  3IJ2 X;  3K51 B;  2UWI A;  4FHQ A;  3U3Q A;  1KJ6 A;  4OD2 S;  4BK5 A;  5DMJ A;  1FD3 A;  1EXT A;  3QD6 R;  4MXW R;  3FL7 A;  4KGQ C;  4E4D R;  2LXO A;  4GIQ R;  3U3S A;  3U3P A;  3URF Z;  1FD4 A;  2AW2 B;  1TNR R;  2HEV R;  3ALQ R;  3BUK C;  3THM F;  1FQQ A;  4M4R A;  3U3V A;  3MI8 D;  4YN0 A;  5CIR E;  1FT4 A;  4BK4 A;  5BNQ R;  1D4V A;  1SG1 X;  4M4P A;  2HEY R;  1ZA3 R;  3ME4 A;  3MBW A;  3WVT A;  1DU3 A;  3QO4 A;  4N90 R;  1D0G R;  4RSU D;  2LWL A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3MHDD

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations