3MI8D

The structure of tl1a-dcr3 complex
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
118
structure length
109
Chain Sequence
TPTYPWRDAETGERLVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRTGFFAHAGFCLEHASCGTPSQNTQC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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connected with : NaN
molecule tags Immune system
source organism Homo sapiens
publication title Decoy Strategies: The Structure of TL1A:DcR3 Complex.
pubmed doi rcsb
molecule keywords TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 15, SECRETED
total genus 13
structure length 109
sequence length 118
ec nomenclature
pdb deposition date 2010-04-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00020 TNFR_c6 TNFR/NGFR cysteine-rich region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.50.10 Mainly Beta Ribbon Tumor Necrosis Factor Receptor, subunit A; domain 2 Tumor Necrosis Factor Receptor, subunit A, domain 2 3mi8D01
3.10.360.30 Alpha Beta Roll Antimicrobial Peptide, Beta-defensin 2; Chain A Antimicrobial Peptide, Beta-defensin 2; Chain A 3mi8D02
2X10A 3K51B 4M4RA 2H9GR 3URFZ 3U3QA 4BK5A 3U3SA 5DMJA 1FT4A 3MBWA 2UWIA 3QBQB 3BUKC 3QO4A 3IJ2X 1NCFA 1TNRR 3MHDD 4M4PA 3U3PA 1D4VA 3TJEF 1ZA3R 3U3TA 3WVTA 4MXWR 3ALQR 4E4DR 4I9XC 4BK4A 1JMAB 4YN0A 2HEVR 3X3FA 1EXTA 4J6GC 3FL7A 4KGQC 5BNQR 2HEYR 3ME2R 3QD6R 4GIQR 4N90R 3U3VA 4MSVB 1DU3A 5L36B 3ME4A 4FHQA 3THMF 4OD2S 4RSUD 4KGGC 5CIRE 5IHLA 3MI8D 1D0GR 1SG1X 2AW2B
chains in the Genus database with same CATH superfamily
2X10A 3K51B 4M4RA 2H9GR 2E4UA 3URFZ 3U3QA 4BK5A 3U3SA 5DMJA 1FQQA 2MJKA 1FT4A 3MBWA 2UWIA 2E4WA 3QBQB 3BUKC 3QO4A 3IJ2X 1NCFA 1TNRR 3MHDD 2QR6A 4M4PA 3U3PA 1D4VA 3TJEF 1ZA3R 3U3TA 1KJ6A 3WVTA 4MXWR 3ALQR 4E4DR 4I9XC 4BK4A 1JMAB 4YN0A 2HEVR 2E4VA 1EXTA 4J6GC 3X3FA 3FL7A 4KGQC 5BNQR 2HEYR 3ME2R 3QD6R 4GIQR 4N90R 3U3VA 4MSVB 2LXOA 1DU3A 2E4XA 5L36B 2E4YA 3ME4A 4FHQA 4OD2S 3THMF 1FD3A 4RSUD 2LWLA 4KGGC 5CIRE 5IHLA 1FD4A 3MI8D 1D0GR 1SG1X 2AW2B
chains in the Genus database with same CATH topology
2X10A 3K51B 4M4RA 2H9GR 3URFZ 3U3QA 4BK5A 3U3SA 5DMJA 1FQQA 2MJKA 1FT4A 3MBWA 2UWIA 3QBQB 3BUKC 3QO4A 3IJ2X 1NCFA 1TNRR 3MHDD 4M4PA 3U3PA 1D4VA 3TJEF 1ZA3R 3U3TA 3WVTA 4MXWR 3ALQR 4E4DR 4I9XC 4BK4A 1JMAB 4YN0A 2HEVR 3X3FA 1EXTA 4J6GC 3FL7A 4KGQC 5BNQR 2HEYR 3ME2R 3QD6R 4GIQR 4N90R 3U3VA 4MSVB 2LXOA 1DU3A 5L36B 1KJ6A 3ME4A 4FHQA 3THMF 4OD2S 1FD3A 4RSUD 2LWLA 4KGGC 5CIRE 5IHLA 1FD4A 3MI8D 1D0GR 1SG1X 2AW2B
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2X10 A;  3K51 B;  4M4R A;  2H9G R;  3URF Z;  3U3Q A;  4BK5 A;  3U3S A;  5DMJ A;  1FT4 A;  3MBW A;  2UWI A;  3QBQ B;  3BUK C;  3QO4 A;  3IJ2 X;  1NCF A;  1TNR R;  3MHD D;  4M4P A;  3U3P A;  1D4V A;  3TJE F;  1ZA3 R;  3U3T A;  3WVT A;  4MXW R;  3ALQ R;  4E4D R;  4I9X C;  4BK4 A;  1JMA B;  4YN0 A;  2HEV R;  3X3F A;  1EXT A;  4J6G C;  3FL7 A;  4KGQ C;  5BNQ R;  2HEY R;  3ME2 R;  3QD6 R;  4GIQ R;  4N90 R;  3U3V A;  4MSV B;  1DU3 A;  5L36 B;  3ME4 A;  4FHQ A;  3THM F;  4OD2 S;  4RSU D;  4KGG C;  5CIR E;  5IHL A;  3MI8 D;  1D0G R;  1SG1 X;  2AW2 B; 
#chains in the Genus database with same CATH topology
 2X10 A;  3K51 B;  4M4R A;  2H9G R;  2E4U A;  3URF Z;  3U3Q A;  4BK5 A;  3U3S A;  5DMJ A;  1FQQ A;  2MJK A;  1FT4 A;  3MBW A;  2UWI A;  2E4W A;  3QBQ B;  3BUK C;  3QO4 A;  3IJ2 X;  1NCF A;  1TNR R;  3MHD D;  2QR6 A;  4M4P A;  3U3P A;  1D4V A;  3TJE F;  1ZA3 R;  3U3T A;  1KJ6 A;  3WVT A;  4MXW R;  3ALQ R;  4E4D R;  4I9X C;  4BK4 A;  1JMA B;  4YN0 A;  2HEV R;  2E4V A;  1EXT A;  4J6G C;  3X3F A;  3FL7 A;  4KGQ C;  5BNQ R;  2HEY R;  3ME2 R;  3QD6 R;  4GIQ R;  4N90 R;  3U3V A;  4MSV B;  2LXO A;  1DU3 A;  2E4X A;  5L36 B;  2E4Y A;  3ME4 A;  4FHQ A;  4OD2 S;  3THM F;  1FD3 A;  4RSU D;  2LWL A;  4KGG C;  5CIR E;  5IHL A;  1FD4 A;  3MI8 D;  1D0G R;  1SG1 X;  2AW2 B; 
#chains in the Genus database with same CATH homology
 2X10 A;  3K51 B;  4M4R A;  2H9G R;  3URF Z;  3U3Q A;  4BK5 A;  3U3S A;  5DMJ A;  1FQQ A;  2MJK A;  1FT4 A;  3MBW A;  2UWI A;  3QBQ B;  3BUK C;  3QO4 A;  3IJ2 X;  1NCF A;  1TNR R;  3MHD D;  4M4P A;  3U3P A;  1D4V A;  3TJE F;  1ZA3 R;  3U3T A;  3WVT A;  4MXW R;  3ALQ R;  4E4D R;  4I9X C;  4BK4 A;  1JMA B;  4YN0 A;  2HEV R;  3X3F A;  1EXT A;  4J6G C;  3FL7 A;  4KGQ C;  5BNQ R;  2HEY R;  3ME2 R;  3QD6 R;  4GIQ R;  4N90 R;  3U3V A;  4MSV B;  2LXO A;  1DU3 A;  5L36 B;  1KJ6 A;  3ME4 A;  4FHQ A;  3THM F;  4OD2 S;  1FD3 A;  4RSU D;  2LWL A;  4KGG C;  5CIR E;  5IHL A;  1FD4 A;  3MI8 D;  1D0G R;  1SG1 X;  2AW2 B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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