3N1SA

Crystal structure of wild type echint gmp complex
Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
117
structure length
117
Chain Sequence
MAEETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPLGPMLAHK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (6-12)S1 (19-23)TIV1 (13-16)TI1 (23-26)EMPTYAH2 (59-76)S2 (26-30)TVIII1 (31-34)S3 (38-44)TI2 (78-81)TI3 (79-82)O1 (115-117)TVIII3 (112-115)3H2 (56-58)S4 (83-87)S5 (102-106)3H3 (91-93)3H1 (51-53)Updating...
connected with : NaN
publication title Probing the Impact of the echinT C-Terminal Domain on Structure and Catalysis.
pubmed doi rcsb
molecule tags Hydrolase
source organism Escherichia coli
molecule keywords HIT-like protein hinT
total genus 29
structure length 117
sequence length 117
chains with identical sequence B, E, F, I, J, M, N
ec nomenclature
pdb deposition date 2010-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01230 HIT HIT domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.10 Alpha Beta 2-Layer Sandwich HIT family, subunit A HIT-like 3n1sA00
4NDIA 3I24A 5CS2A 4INCA 5RHNA 4ZKLA 4EQHA 4NJXA 3N1TA 4QEBA 2FITA 1XMMA 2Q4LA 3KSVA 3NRDA 1Z84A 1KPEA 1ST4A 4QDVA 3SPDA 1GUPA 5EMTA 1GUQA 6FITA 1VLRA 3OXKA 4ZKVA 2EO4A 4ZGLA 1Y23A 2Q4HA 4FITA 2H39A 3OHEA 3O1ZA 4EGUA 3FITA 1ZWJA 6RHNA 3ANOA 5IN3A 5I2EA 5IPCA 4INIA 5IPEA 1KPBA 3SZQA 3BL7A 3N1SA 1KPAA 3L7XA 3WO5A 4NDGA 4NK0A 4NJZA 5IPBA 1AV5A 3LB5A 3P0TA 3R6FA 3IMIA 1HXPA 5BV3A 3I4SA 1XMLA 3OJ7A 3O0MA 4EQEA 5IPDA 4QDEA 4YKLB 1FITA 4XBAA 3BLAA 1ST0A 1FHIA 4NDFA 3O1CA 1KPFA 3RHNA 4NDHA 5ED6A 1RZYA 3QGZA 5FITA 3O1XA 1KPCA 4EQGA 4NJYA 3OMFA 1EMSA 3BL9A 3SP4A 2OIKA 4RHNA 3SPLA 3TW2A 5I2FA 2FHIA 5ED3A 1HXQA
chains in the Genus database with same CATH superfamily
4NDIA 3I24A 5CS2A 4G0JA 4I5VA 4INCA 5RHNA 4ZKLA 4EQHA 4NJXA 3N1TA 2GU0A 4QEBA 2FITA 1XMMA 2Q4LA 3KSVA 3NRDA 1Z84A 1KPEA 1ST4A 4QDVA 3SPDA 1GUPA 5EMTA 1GUQA 6FITA 1VLRA 2R8FA 3OXKA 4ZKVA 2EO4A 4ZGLA 1Y23A 2Q4HA 4FITA 2H39A 3OHEA 3O1ZA 4EGUA 3FITA 1ZWJA 6RHNA 3ANOA 5IN3A 5I2EA 5IPCA 4INIA 5IPEA 1KPBA 3SZQA 1L9VA 3BL7A 3N1SA 1KPAA 3L7XA 3WO5A 4NDGA 4NK0A 4NJZA 5IPBA 4I5TA 2R7CA 1AV5A 3LB5A 3P0TA 4G0AA 3R6FA 3IMIA 1HXPA 5BV3A 3I4SA 4I5WA 1XMLA 2R7PA 3OJ7A 3O0MA 4EQEA 5IPDA 4QDEA 4YKLB 1FITA 4XBAA 3BLAA 2R7JA 1ST0A 1FHIA 4NDFA 3O1CA 1KPFA 3RHNA 4NDHA 5ED6A 1RZYA 3QGZA 5FITA 3O1XA 1KPCA 4EQGA 2LJWA 4NJYA 3OMFA 1EMSA 3BL9A 3SP4A 2OIKA 4RHNA 3SPLA 3TW2A 2POFA 5I2FA 2FHIA 5ED3A 1HXQA
chains in the Genus database with same CATH topology
4NDIA 3I24A 5CS2A 4INCA 5RHNA 4ZKLA 4EQHA 4NJXA 3N1TA 4QEBA 2FITA 1XMMA 2Q4LA 3KSVA 3NRDA 1Z84A 1KPEA 1ST4A 4QDVA 3SPDA 1GUPA 5EMTA 1GUQA 6FITA 1VLRA 3OXKA 4ZKVA 2EO4A 4ZGLA 1Y23A 2Q4HA 4FITA 2H39A 3OHEA 3O1ZA 4EGUA 3FITA 1ZWJA 6RHNA 3ANOA 5IN3A 5I2EA 5IPCA 4INIA 5IPEA 1KPBA 3SZQA 3BL7A 3N1SA 1KPAA 3L7XA 3WO5A 4NDGA 4NK0A 4NJZA 5IPBA 1AV5A 3LB5A 3P0TA 3R6FA 3IMIA 1HXPA 5BV3A 3I4SA 1XMLA 3OJ7A 3O0MA 4EQEA 5IPDA 4QDEA 4YKLB 1FITA 4XBAA 3BLAA 1ST0A 1FHIA 4NDFA 3O1CA 1KPFA 3RHNA 4NDHA 5ED6A 1RZYA 3QGZA 5FITA 3O1XA 1KPCA 4EQGA 4NJYA 3OMFA 1EMSA 3BL9A 3SP4A 2OIKA 4RHNA 3SPLA 3TW2A 5I2FA 2FHIA 5ED3A 1HXQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NDI A;  3I24 A;  5CS2 A;  4INC A;  5RHN A;  4ZKL A;  4EQH A;  4NJX A;  3N1T A;  4QEB A;  2FIT A;  1XMM A;  2Q4L A;  3KSV A;  3NRD A;  1Z84 A;  1KPE A;  1ST4 A;  4QDV A;  3SPD A;  1GUP A;  5EMT A;  1GUQ A;  6FIT A;  1VLR A;  3OXK A;  4ZKV A;  2EO4 A;  4ZGL A;  1Y23 A;  2Q4H A;  4FIT A;  2H39 A;  3OHE A;  3O1Z A;  4EGU A;  3FIT A;  1ZWJ A;  6RHN A;  3ANO A;  5IN3 A;  5I2E A;  5IPC A;  4INI A;  5IPE A;  1KPB A;  3SZQ A;  3BL7 A;  3N1S A;  1KPA A;  3L7X A;  3WO5 A;  4NDG A;  4NK0 A;  4NJZ A;  5IPB A;  1AV5 A;  3LB5 A;  3P0T A;  3R6F A;  3IMI A;  1HXP A;  5BV3 A;  3I4S A;  1XML A;  3OJ7 A;  3O0M A;  4EQE A;  5IPD A;  4QDE A;  4YKL B;  1FIT A;  4XBA A;  3BLA A;  1ST0 A;  1FHI A;  4NDF A;  3O1C A;  1KPF A;  3RHN A;  4NDH A;  5ED6 A;  1RZY A;  3QGZ A;  5FIT A;  3O1X A;  1KPC A;  4EQG A;  4NJY A;  3OMF A;  1EMS A;  3BL9 A;  3SP4 A;  2OIK A;  4RHN A;  3SPL A;  3TW2 A;  5I2F A;  2FHI A;  5ED3 A;  1HXQ A; 
#chains in the Genus database with same CATH topology
 4NDI A;  3I24 A;  5CS2 A;  4G0J A;  4I5V A;  4INC A;  5RHN A;  4ZKL A;  4EQH A;  4NJX A;  3N1T A;  2GU0 A;  4QEB A;  2FIT A;  1XMM A;  2Q4L A;  3KSV A;  3NRD A;  1Z84 A;  1KPE A;  1ST4 A;  4QDV A;  3SPD A;  1GUP A;  5EMT A;  1GUQ A;  6FIT A;  1VLR A;  2R8F A;  3OXK A;  4ZKV A;  2EO4 A;  4ZGL A;  1Y23 A;  2Q4H A;  4FIT A;  2H39 A;  3OHE A;  3O1Z A;  4EGU A;  3FIT A;  1ZWJ A;  6RHN A;  3ANO A;  5IN3 A;  5I2E A;  5IPC A;  4INI A;  5IPE A;  1KPB A;  3SZQ A;  1L9V A;  3BL7 A;  3N1S A;  1KPA A;  3L7X A;  3WO5 A;  4NDG A;  4NK0 A;  4NJZ A;  5IPB A;  4I5T A;  2R7C A;  1AV5 A;  3LB5 A;  3P0T A;  4G0A A;  3R6F A;  3IMI A;  1HXP A;  5BV3 A;  3I4S A;  4I5W A;  1XML A;  2R7P A;  3OJ7 A;  3O0M A;  4EQE A;  5IPD A;  4QDE A;  4YKL B;  1FIT A;  4XBA A;  3BLA A;  2R7J A;  1ST0 A;  1FHI A;  4NDF A;  3O1C A;  1KPF A;  3RHN A;  4NDH A;  5ED6 A;  1RZY A;  3QGZ A;  5FIT A;  3O1X A;  1KPC A;  4EQG A;  2LJW A;  4NJY A;  3OMF A;  1EMS A;  3BL9 A;  3SP4 A;  2OIK A;  4RHN A;  3SPL A;  3TW2 A;  2POF A;  5I2F A;  2FHI A;  5ED3 A;  1HXQ A; 
#chains in the Genus database with same CATH homology
 4NDI A;  3I24 A;  5CS2 A;  4INC A;  5RHN A;  4ZKL A;  4EQH A;  4NJX A;  3N1T A;  4QEB A;  2FIT A;  1XMM A;  2Q4L A;  3KSV A;  3NRD A;  1Z84 A;  1KPE A;  1ST4 A;  4QDV A;  3SPD A;  1GUP A;  5EMT A;  1GUQ A;  6FIT A;  1VLR A;  3OXK A;  4ZKV A;  2EO4 A;  4ZGL A;  1Y23 A;  2Q4H A;  4FIT A;  2H39 A;  3OHE A;  3O1Z A;  4EGU A;  3FIT A;  1ZWJ A;  6RHN A;  3ANO A;  5IN3 A;  5I2E A;  5IPC A;  4INI A;  5IPE A;  1KPB A;  3SZQ A;  3BL7 A;  3N1S A;  1KPA A;  3L7X A;  3WO5 A;  4NDG A;  4NK0 A;  4NJZ A;  5IPB A;  1AV5 A;  3LB5 A;  3P0T A;  3R6F A;  3IMI A;  1HXP A;  5BV3 A;  3I4S A;  1XML A;  3OJ7 A;  3O0M A;  4EQE A;  5IPD A;  4QDE A;  4YKL B;  1FIT A;  4XBA A;  3BLA A;  1ST0 A;  1FHI A;  4NDF A;  3O1C A;  1KPF A;  3RHN A;  4NDH A;  5ED6 A;  1RZY A;  3QGZ A;  5FIT A;  3O1X A;  1KPC A;  4EQG A;  4NJY A;  3OMF A;  1EMS A;  3BL9 A;  3SP4 A;  2OIK A;  4RHN A;  3SPL A;  3TW2 A;  5I2F A;  2FHI A;  5ED3 A;  1HXQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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