3NRDA

Crystal structure of a histidine triad (hit) protein (smc02904) from sinorhizobium meliloti 1021 at 2.06 a resolution
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
135
structure length
135
Chain Sequence
GMTTFTLDERLERDGIPIGTLGLCQMRLMNDRRWPWLILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIGALGNIVRQLHVHVIARREGDPNWPGPVWGFGKAEPWPEEEHRTFAARIMENL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a histidine triad (HIT) protein (SMc02904) from SINORHIZOBIUM MELILOTI 1021 at 2.06 A resolution
rcsb
molecule tags Nucleotide binding protein
source organism Sinorhizobium meliloti
molecule keywords histidine triad (HIT) protein
total genus 33
structure length 135
sequence length 135
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2010-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01230 HIT HIT domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.10 Alpha Beta 2-Layer Sandwich HIT family, subunit A HIT-like 3nrdA00
4QDVA 2FITA 3KSVA 4INIA 2Q4HA 4NDIA 1EMSA 1HXQA 4INCA 1KPBA 3O1ZA 3SPDA 5IPDA 1RZYA 3LB5A 3FITA 1Y23A 4NJYA 3IMIA 3O1CA 1FHIA 5BV3A 3SPLA 5ED3A 5EMTA 4YKLB 1FITA 5RHNA 3SZQA 5IPBA 1AV5A 3N1SA 3NRDA 1XMMA 4QDEA 3N1TA 3BL9A 5FITA 3O1XA 5I2FA 3BL7A 2H39A 3O0MA 1KPCA 1VLRA 1GUPA 3QGZA 2OIKA 3OJ7A 5ED6A 4EGUA 1ST4A 3R6FA 1XMLA 3OHEA 3SP4A 1KPFA 1ZWJA 3OMFA 2Q4LA 2FHIA 1Z84A 3RHNA 6FITA 6RHNA 4FITA 4EQHA 4NDGA 3I24A 4ZKVA 3OXKA 4RHNA 1ST0A 4NK0A 1GUQA 5CS2A 3L7XA 4NDHA 3WO5A 4NJZA 3I4SA 1KPAA 3BLAA 5IPEA 4NDFA 4XBAA 5IPCA 4EQGA 5IN3A 1HXPA 4ZGLA 4QEBA 3TW2A 3ANOA 4NJXA 2EO4A 4ZKLA 4EQEA 1KPEA 3P0TA 5I2EA
chains in the Genus database with same CATH superfamily
4QDVA 2FITA 3KSVA 4INIA 2Q4HA 2R7JA 4NDIA 1EMSA 1HXQA 4INCA 1KPBA 3O1ZA 3SPDA 5IPDA 1RZYA 3LB5A 4I5WA 2POFA 3FITA 1Y23A 2LJWA 4NJYA 4G0AA 3IMIA 3O1CA 1FHIA 5BV3A 3SPLA 5ED3A 5EMTA 4YKLB 1FITA 5RHNA 3SZQA 5IPBA 2GU0A 1AV5A 3N1SA 3NRDA 1XMMA 4QDEA 3N1TA 3BL9A 5FITA 3O1XA 5I2FA 3BL7A 2H39A 3O0MA 1KPCA 1VLRA 1GUPA 3QGZA 2OIKA 3OJ7A 5ED6A 4EGUA 1ST4A 3R6FA 1XMLA 3OHEA 3SP4A 1KPFA 1ZWJA 3OMFA 2Q4LA 2R7CA 2FHIA 1Z84A 3RHNA 6FITA 6RHNA 4FITA 2R7PA 4EQHA 4NDGA 4I5VA 3I24A 4ZKVA 1L9VA 3OXKA 4RHNA 1ST0A 4I5TA 4NK0A 1GUQA 5CS2A 3L7XA 4NDHA 3WO5A 4NJZA 3I4SA 2R8FA 1KPAA 3BLAA 5IPEA 4NDFA 4XBAA 5IPCA 4EQGA 5IN3A 4G0JA 1HXPA 4ZGLA 4QEBA 3TW2A 3ANOA 4NJXA 2EO4A 4ZKLA 4EQEA 1KPEA 3P0TA 5I2EA
chains in the Genus database with same CATH topology
4QDVA 2FITA 3KSVA 4INIA 2Q4HA 4NDIA 1EMSA 1HXQA 4INCA 1KPBA 3O1ZA 3SPDA 5IPDA 1RZYA 3LB5A 3FITA 1Y23A 4NJYA 3IMIA 3O1CA 1FHIA 5BV3A 3SPLA 5ED3A 5EMTA 4YKLB 1FITA 5RHNA 3SZQA 5IPBA 1AV5A 3N1SA 3NRDA 1XMMA 4QDEA 3N1TA 3BL9A 5FITA 3O1XA 5I2FA 3BL7A 2H39A 3O0MA 1KPCA 1VLRA 1GUPA 3QGZA 2OIKA 3OJ7A 5ED6A 4EGUA 1ST4A 3R6FA 1XMLA 3OHEA 3SP4A 1KPFA 1ZWJA 3OMFA 2Q4LA 2FHIA 1Z84A 3RHNA 6FITA 6RHNA 4FITA 4EQHA 4NDGA 3I24A 4ZKVA 3OXKA 4RHNA 1ST0A 4NK0A 1GUQA 5CS2A 3L7XA 4NDHA 3WO5A 4NJZA 3I4SA 1KPAA 3BLAA 5IPEA 4NDFA 4XBAA 5IPCA 4EQGA 5IN3A 1HXPA 4ZGLA 4QEBA 3TW2A 3ANOA 4NJXA 2EO4A 4ZKLA 4EQEA 1KPEA 3P0TA 5I2EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QDV A;  2FIT A;  3KSV A;  4INI A;  2Q4H A;  4NDI A;  1EMS A;  1HXQ A;  4INC A;  1KPB A;  3O1Z A;  3SPD A;  5IPD A;  1RZY A;  3LB5 A;  3FIT A;  1Y23 A;  4NJY A;  3IMI A;  3O1C A;  1FHI A;  5BV3 A;  3SPL A;  5ED3 A;  5EMT A;  4YKL B;  1FIT A;  5RHN A;  3SZQ A;  5IPB A;  1AV5 A;  3N1S A;  3NRD A;  1XMM A;  4QDE A;  3N1T A;  3BL9 A;  5FIT A;  3O1X A;  5I2F A;  3BL7 A;  2H39 A;  3O0M A;  1KPC A;  1VLR A;  1GUP A;  3QGZ A;  2OIK A;  3OJ7 A;  5ED6 A;  4EGU A;  1ST4 A;  3R6F A;  1XML A;  3OHE A;  3SP4 A;  1KPF A;  1ZWJ A;  3OMF A;  2Q4L A;  2FHI A;  1Z84 A;  3RHN A;  6FIT A;  6RHN A;  4FIT A;  4EQH A;  4NDG A;  3I24 A;  4ZKV A;  3OXK A;  4RHN A;  1ST0 A;  4NK0 A;  1GUQ A;  5CS2 A;  3L7X A;  4NDH A;  3WO5 A;  4NJZ A;  3I4S A;  1KPA A;  3BLA A;  5IPE A;  4NDF A;  4XBA A;  5IPC A;  4EQG A;  5IN3 A;  1HXP A;  4ZGL A;  4QEB A;  3TW2 A;  3ANO A;  4NJX A;  2EO4 A;  4ZKL A;  4EQE A;  1KPE A;  3P0T A;  5I2E A; 
#chains in the Genus database with same CATH topology
 4QDV A;  2FIT A;  3KSV A;  4INI A;  2Q4H A;  2R7J A;  4NDI A;  1EMS A;  1HXQ A;  4INC A;  1KPB A;  3O1Z A;  3SPD A;  5IPD A;  1RZY A;  3LB5 A;  4I5W A;  2POF A;  3FIT A;  1Y23 A;  2LJW A;  4NJY A;  4G0A A;  3IMI A;  3O1C A;  1FHI A;  5BV3 A;  3SPL A;  5ED3 A;  5EMT A;  4YKL B;  1FIT A;  5RHN A;  3SZQ A;  5IPB A;  2GU0 A;  1AV5 A;  3N1S A;  3NRD A;  1XMM A;  4QDE A;  3N1T A;  3BL9 A;  5FIT A;  3O1X A;  5I2F A;  3BL7 A;  2H39 A;  3O0M A;  1KPC A;  1VLR A;  1GUP A;  3QGZ A;  2OIK A;  3OJ7 A;  5ED6 A;  4EGU A;  1ST4 A;  3R6F A;  1XML A;  3OHE A;  3SP4 A;  1KPF A;  1ZWJ A;  3OMF A;  2Q4L A;  2R7C A;  2FHI A;  1Z84 A;  3RHN A;  6FIT A;  6RHN A;  4FIT A;  2R7P A;  4EQH A;  4NDG A;  4I5V A;  3I24 A;  4ZKV A;  1L9V A;  3OXK A;  4RHN A;  1ST0 A;  4I5T A;  4NK0 A;  1GUQ A;  5CS2 A;  3L7X A;  4NDH A;  3WO5 A;  4NJZ A;  3I4S A;  2R8F A;  1KPA A;  3BLA A;  5IPE A;  4NDF A;  4XBA A;  5IPC A;  4EQG A;  5IN3 A;  4G0J A;  1HXP A;  4ZGL A;  4QEB A;  3TW2 A;  3ANO A;  4NJX A;  2EO4 A;  4ZKL A;  4EQE A;  1KPE A;  3P0T A;  5I2E A; 
#chains in the Genus database with same CATH homology
 4QDV A;  2FIT A;  3KSV A;  4INI A;  2Q4H A;  4NDI A;  1EMS A;  1HXQ A;  4INC A;  1KPB A;  3O1Z A;  3SPD A;  5IPD A;  1RZY A;  3LB5 A;  3FIT A;  1Y23 A;  4NJY A;  3IMI A;  3O1C A;  1FHI A;  5BV3 A;  3SPL A;  5ED3 A;  5EMT A;  4YKL B;  1FIT A;  5RHN A;  3SZQ A;  5IPB A;  1AV5 A;  3N1S A;  3NRD A;  1XMM A;  4QDE A;  3N1T A;  3BL9 A;  5FIT A;  3O1X A;  5I2F A;  3BL7 A;  2H39 A;  3O0M A;  1KPC A;  1VLR A;  1GUP A;  3QGZ A;  2OIK A;  3OJ7 A;  5ED6 A;  4EGU A;  1ST4 A;  3R6F A;  1XML A;  3OHE A;  3SP4 A;  1KPF A;  1ZWJ A;  3OMF A;  2Q4L A;  2FHI A;  1Z84 A;  3RHN A;  6FIT A;  6RHN A;  4FIT A;  4EQH A;  4NDG A;  3I24 A;  4ZKV A;  3OXK A;  4RHN A;  1ST0 A;  4NK0 A;  1GUQ A;  5CS2 A;  3L7X A;  4NDH A;  3WO5 A;  4NJZ A;  3I4S A;  1KPA A;  3BLA A;  5IPE A;  4NDF A;  4XBA A;  5IPC A;  4EQG A;  5IN3 A;  1HXP A;  4ZGL A;  4QEB A;  3TW2 A;  3ANO A;  4NJX A;  2EO4 A;  4ZKL A;  4EQE A;  1KPE A;  3P0T A;  5I2E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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