The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
15
|
sequence length |
135
|
structure length |
135
|
Chain Sequence |
YLHYDPETGHQLLCDKCAPGTYLKQHCTVRRKTLCVPCPDHSYTDSWHTSDECVYCSPVCKELQSVKQECNRTHNRVCECEEGRYLEIEFCLKHRSCPPGSGVVQAGTPERNTVCKKCPDGFFSGETSSKAPCIK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
RANKL Employs Distinct Binding Modes to Engage RANK and the Osteoprotegerin Decoy Receptor.
pubmed doi rcsb |
| molecule keywords |
Tumor necrosis factor ligand superfamily member 11, soluble
|
| molecule tags |
Cytokine/signaling protein
|
| source organism |
Mus musculus
|
| total genus |
15
|
| structure length |
135
|
| sequence length |
135
|
| ec nomenclature | |
| pdb deposition date | 2012-03-12 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| R | PF00020 | TNFR_c6 | TNFR/NGFR cysteine-rich region |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Ribbon | Tumor Necrosis Factor Receptor, subunit A; domain 2 | Tumor Necrosis Factor Receptor, subunit A, domain 2 | ||
| Alpha Beta | Roll | Antimicrobial Peptide, Beta-defensin 2; Chain A | Antimicrobial Peptide, Beta-defensin 2; Chain A |
#chains in the Genus database with same CATH superfamily 3QBQ B; 4YN0 A; 1D0G R; 5CIR E; 4GIQ R; 4OD2 S; 4BK4 A; 3QO4 A; 5BNQ R; 2HEY R; 3MHD D; 3FL7 A; 1ZA3 R; 3ME2 R; 5IHL A; 3K51 B; 1FT4 A; 4BK5 A; 3U3T A; 3WVT A; 3X3F A; 1NCF A; 4KGG C; 1D4V A; 2X10 A; 3THM F; 1SG1 X; 3U3Q A; 3ALQ R; 5DMJ A; 3MBW A; 4J6G C; 3IJ2 X; 4KGQ C; 5L36 B; 2HEV R; 3TJE F; 4MSV B; 4N90 R; 2AW2 B; 3MI8 D; 1EXT A; 3U3V A; 1DU3 A; 3URF Z; 2H9G R; 3BUK C; 4E4D R; 3ME4 A; 3U3S A; 1JMA B; 4M4P A; 4MXW R; 4M4R A; 4FHQ A; 1TNR R; 4RSU D; 3U3P A; 2UWI A; 4I9X C; 3QD6 R; #chains in the Genus database with same CATH topology 1FD3 A; 3QBQ B; 1FD4 A; 4YN0 A; 2LXO A; 1D0G R; 2QR6 A; 5CIR E; 4GIQ R; 4OD2 S; 4BK4 A; 3QO4 A; 5BNQ R; 2HEY R; 3MHD D; 3FL7 A; 1ZA3 R; 2E4V A; 3ME2 R; 2E4U A; 1FT4 A; 3K51 B; 5IHL A; 4BK5 A; 3U3T A; 2MJK A; 1KJ6 A; 3WVT A; 3X3F A; 1NCF A; 4KGG C; 1D4V A; 2X10 A; 3THM F; 1SG1 X; 3U3Q A; 2LWL A; 3ALQ R; 5DMJ A; 3MBW A; 4J6G C; 3IJ2 X; 4KGQ C; 5L36 B; 2HEV R; 3TJE F; 4MSV B; 4N90 R; 2AW2 B; 2E4Y A; 3MI8 D; 1EXT A; 3U3V A; 1DU3 A; 3URF Z; 2H9G R; 2E4X A; 3BUK C; 4E4D R; 3ME4 A; 3U3S A; 1FQQ A; 1JMA B; 4M4P A; 4MXW R; 4M4R A; 4FHQ A; 1TNR R; 2E4W A; 4RSU D; 3U3P A; 2UWI A; 4I9X C; 3QD6 R; #chains in the Genus database with same CATH homology 1FD3 A; 3QBQ B; 1FD4 A; 4YN0 A; 2LXO A; 1D0G R; 5CIR E; 4GIQ R; 4OD2 S; 4BK4 A; 3QO4 A; 5BNQ R; 2HEY R; 3MHD D; 3FL7 A; 1ZA3 R; 3ME2 R; 5IHL A; 3K51 B; 1FT4 A; 4BK5 A; 3U3T A; 2MJK A; 1KJ6 A; 3WVT A; 3X3F A; 1NCF A; 4KGG C; 1D4V A; 2X10 A; 3THM F; 1SG1 X; 3U3Q A; 2LWL A; 3ALQ R; 5DMJ A; 3MBW A; 4J6G C; 3IJ2 X; 4KGQ C; 5L36 B; 2HEV R; 3TJE F; 4MSV B; 4N90 R; 2AW2 B; 3MI8 D; 1EXT A; 3U3V A; 1DU3 A; 3URF Z; 2H9G R; 3BUK C; 4E4D R; 1FQQ A; 3ME4 A; 3U3S A; 1JMA B; 4M4P A; 4MXW R; 4M4R A; 4FHQ A; 1TNR R; 4RSU D; 3U3P A; 2UWI A; 4I9X C; 3QD6 R;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
