4I5WA

Crystal structure of yeast ap4a phosphorylase apa2 in complex with amp
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
319
structure length
292
Chain Sequence
MIEENLKQKIHDKFVAAKKNGHLKVTHAESKKLKDPQTTTQYWVTFAPSLALDPFANPDEELVVTEDLNGDGEYKLLLNKFPVVPEHSLLVTSEFKDQRSALTPSDLMTAYNVLCSLQGCERYLVFYNCGPHSGSSQDHKHLQIMQMPEKFIPFQDVLCNGKDHFLPTFNAEPLQDDKVSFAHFVLPLPESSDQVDEDLLAMCYVSLMQRALTFFQDLTKSYNVLLTKKWICVVPRSHAKSGPPLMLNINSTGYCGMILVKDREKLENLTEDPHLVDKSLLQCGFPNTAGQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of yeast Apa2 reveal catalytic insights into a canonical AP4A phosphorylase of the histidine triad superfamily
pubmed doi rcsb
molecule tags Transferase
source organism Saccharomyces cerevisiae
molecule keywords 5',5'''-P-1,P-4-tetraphosphate phosphorylase 2
total genus 85
structure length 292
sequence length 319
chains with identical sequence B
ec nomenclature ec 2.7.7.5: Sulfate adenylyltransferase (ADP).
pdb deposition date 2012-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09830 ATP_transf ATP adenylyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.70 Alpha Beta 2-Layer Sandwich HIT family, subunit A HIT family, subunit A 4i5wA00
4I5TA 4I5WA 4I5VA
chains in the Genus database with same CATH superfamily
6RHNA 3KSVA 4G0JA 4QDEA 3RHNA 4QEBA 1VLRA 4I5WA 6FITA 1XMMA 4NDFA 5I2FA 5ED6A 3SP4A 3ANOA 3I4SA 2LJWA 3O1CA 1HXPA 3I24A 1EMSA 2FITA 4ZKVA 1Y23A 1GUQA 5IN3A 3SZQA 1Z84A 4XBAA 1FHIA 2Q4LA 2FHIA 1FITA 4INCA 1KPEA 1RZYA 3IMIA 4EQHA 3N1TA 4NDHA 1XMLA 5CS2A 3BLAA 2R7CA 3BL7A 5FITA 3QGZA 2H39A 1KPBA 2POFA 4INIA 3SPDA 1ZWJA 3TW2A 2R8FA 4NDGA 4G0AA 4NJYA 3P0TA 1KPAA 3NRDA 4ZKLA 5IPEA 4EQEA 2OIKA 3N1SA 3LB5A 3SPLA 4ZGLA 3BL9A 5RHNA 1KPCA 3FITA 1GUPA 4QDVA 3OHEA 4RHNA 3OJ7A 3OMFA 1L9VA 5ED3A 4NJZA 2GU0A 5IPCA 1ST0A 4EGUA 5BV3A 1ST4A 2Q4HA 4EQGA 3R6FA 2R7JA 4NK0A 3O0MA 4I5TA 1KPFA 3O1ZA 2EO4A 3L7XA 5I2EA 5IPBA 2R7PA 3OXKA 3WO5A 4FITA 1HXQA 5EMTA 5IPDA 1AV5A 4NDIA 4I5VA 4YKLB 4NJXA 3O1XA
chains in the Genus database with same CATH topology
4I5TA 2LJWA 4I5VA 4I5WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4I5T A;  4I5W A;  4I5V A; 
#chains in the Genus database with same CATH topology
 6RHN A;  3KSV A;  4G0J A;  4QDE A;  3RHN A;  4QEB A;  1VLR A;  4I5W A;  6FIT A;  1XMM A;  4NDF A;  5I2F A;  5ED6 A;  3SP4 A;  3ANO A;  3I4S A;  2LJW A;  3O1C A;  1HXP A;  3I24 A;  1EMS A;  2FIT A;  4ZKV A;  1Y23 A;  1GUQ A;  5IN3 A;  3SZQ A;  1Z84 A;  4XBA A;  1FHI A;  2Q4L A;  2FHI A;  1FIT A;  4INC A;  1KPE A;  1RZY A;  3IMI A;  4EQH A;  3N1T A;  4NDH A;  1XML A;  5CS2 A;  3BLA A;  2R7C A;  3BL7 A;  5FIT A;  3QGZ A;  2H39 A;  1KPB A;  2POF A;  4INI A;  3SPD A;  1ZWJ A;  3TW2 A;  2R8F A;  4NDG A;  4G0A A;  4NJY A;  3P0T A;  1KPA A;  3NRD A;  4ZKL A;  5IPE A;  4EQE A;  2OIK A;  3N1S A;  3LB5 A;  3SPL A;  4ZGL A;  3BL9 A;  5RHN A;  1KPC A;  3FIT A;  1GUP A;  4QDV A;  3OHE A;  4RHN A;  3OJ7 A;  3OMF A;  1L9V A;  5ED3 A;  4NJZ A;  2GU0 A;  5IPC A;  1ST0 A;  4EGU A;  5BV3 A;  1ST4 A;  2Q4H A;  4EQG A;  3R6F A;  2R7J A;  4NK0 A;  3O0M A;  4I5T A;  1KPF A;  3O1Z A;  2EO4 A;  3L7X A;  5I2E A;  5IPB A;  2R7P A;  3OXK A;  3WO5 A;  4FIT A;  1HXQ A;  5EMT A;  5IPD A;  1AV5 A;  4NDI A;  4I5V A;  4YKL B;  4NJX A;  3O1X A; 
#chains in the Genus database with same CATH homology
 4I5T A;  2LJW A;  4I5V A;  4I5W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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