The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
60
|
sequence length |
180
|
structure length |
180
|
Chain Sequence |
GSHMGHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPQARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHW
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Aprataxin resolves adenylated RNA-DNA junctions to maintain genome integrity.
pubmed doi rcsb |
| molecule tags |
Dna binding protein/rna/dna
|
| source organism |
Homo sapiens
|
| molecule keywords |
Aprataxin
|
| total genus |
60
|
| structure length |
180
|
| sequence length |
180
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
3.1.11.7: Adenosine-5'-diphospho-5'-(DNA) diphosphatase. |
| pdb deposition date | 2013-10-26 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF11969 | DcpS_C | Scavenger mRNA decapping enzyme C-term binding |
| A | PF16278 | zf-C2HE | C2HE / C2H2 / C2HC zinc-binding finger |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | HIT family, subunit A | HIT-like |
#chains in the Genus database with same CATH superfamily 3OMF A; 5IPC A; 3KSV A; 3WO5 A; 1FIT A; 5BV3 A; 5IPD A; 1GUQ A; 1KPC A; 3I24 A; 3L7X A; 1EMS A; 3O0M A; 1KPB A; 4ZKV A; 5FIT A; 3BLA A; 3N1T A; 3NRD A; 3OHE A; 3O1X A; 3QGZ A; 6FIT A; 5ED3 A; 1ST4 A; 1FHI A; 4NJX A; 1KPE A; 3P0T A; 5EMT A; 4QDE A; 4INI A; 3OXK A; 1RZY A; 5RHN A; 4NDG A; 1Y23 A; 3BL9 A; 3SPD A; 3SP4 A; 2EO4 A; 2OIK A; 4NJY A; 4ZKL A; 4RHN A; 4INC A; 1HXP A; 2H39 A; 3RHN A; 1HXQ A; 2FHI A; 4QEB A; 5I2F A; 5IPE A; 5IN3 A; 3SPL A; 1ZWJ A; 2Q4H A; 5IPB A; 1GUP A; 3TW2 A; 1VLR A; 4FIT A; 4EQH A; 4ZGL A; 4QDV A; 1Z84 A; 4NJZ A; 3ANO A; 2FIT A; 1XML A; 1KPF A; 3SZQ A; 4EQE A; 3I4S A; 4XBA A; 3O1C A; 3IMI A; 5CS2 A; 3OJ7 A; 3BL7 A; 5I2E A; 4EGU A; 3O1Z A; 5ED6 A; 1XMM A; 4EQG A; 4NDF A; 4NK0 A; 4YKL B; 4NDI A; 2Q4L A; 1ST0 A; 1AV5 A; 6RHN A; 3N1S A; 3LB5 A; 3R6F A; 1KPA A; 4NDH A; 3FIT A; #chains in the Genus database with same CATH topology 3OMF A; 5IPC A; 3KSV A; 3WO5 A; 1FIT A; 5BV3 A; 5IPD A; 1GUQ A; 2R8F A; 2R7P A; 1KPC A; 3I24 A; 3L7X A; 1EMS A; 3O0M A; 1KPB A; 4ZKV A; 5FIT A; 3BLA A; 3N1T A; 3NRD A; 3OHE A; 3O1X A; 3QGZ A; 6FIT A; 1ST4 A; 5ED3 A; 1FHI A; 4NJX A; 1KPE A; 2GU0 A; 3P0T A; 4I5V A; 5EMT A; 4QDE A; 4INI A; 4G0J A; 3OXK A; 1RZY A; 1L9V A; 5RHN A; 4NDG A; 1Y23 A; 3BL9 A; 3SPD A; 3SP4 A; 2EO4 A; 2OIK A; 4NJY A; 4ZKL A; 4RHN A; 4INC A; 1HXP A; 2H39 A; 3RHN A; 1HXQ A; 2FHI A; 4QEB A; 5I2F A; 2R7C A; 5IPE A; 5IN3 A; 3SPL A; 1ZWJ A; 2Q4H A; 5IPB A; 2LJW A; 1GUP A; 3TW2 A; 4I5T A; 1VLR A; 4FIT A; 4EQH A; 4ZGL A; 4QDV A; 1Z84 A; 4NJZ A; 3ANO A; 2FIT A; 1XML A; 1KPF A; 3SZQ A; 4EQE A; 3I4S A; 4XBA A; 3O1C A; 3IMI A; 5CS2 A; 3OJ7 A; 3BL7 A; 5I2E A; 4EGU A; 3O1Z A; 5ED6 A; 1XMM A; 4G0A A; 4EQG A; 4NDF A; 4NK0 A; 4YKL B; 4NDI A; 2POF A; 2Q4L A; 1ST0 A; 1AV5 A; 6RHN A; 3N1S A; 3LB5 A; 3R6F A; 1KPA A; 2R7J A; 4NDH A; 3FIT A; 4I5W A; #chains in the Genus database with same CATH homology 3OMF A; 5IPC A; 3KSV A; 3WO5 A; 1FIT A; 5BV3 A; 5IPD A; 1GUQ A; 1KPC A; 3I24 A; 3L7X A; 1EMS A; 3O0M A; 1KPB A; 4ZKV A; 5FIT A; 3BLA A; 3N1T A; 3NRD A; 3OHE A; 3O1X A; 3QGZ A; 6FIT A; 5ED3 A; 1ST4 A; 1FHI A; 4NJX A; 1KPE A; 3P0T A; 5EMT A; 4QDE A; 4INI A; 3OXK A; 1RZY A; 5RHN A; 4NDG A; 1Y23 A; 3BL9 A; 3SPD A; 3SP4 A; 2EO4 A; 2OIK A; 4NJY A; 4ZKL A; 4RHN A; 4INC A; 1HXP A; 2H39 A; 3RHN A; 1HXQ A; 2FHI A; 4QEB A; 5I2F A; 5IPE A; 5IN3 A; 3SPL A; 1ZWJ A; 2Q4H A; 5IPB A; 1GUP A; 3TW2 A; 1VLR A; 4FIT A; 4EQH A; 4ZGL A; 4QDV A; 1Z84 A; 4NJZ A; 3ANO A; 2FIT A; 1XML A; 1KPF A; 3SZQ A; 4EQE A; 3I4S A; 4XBA A; 3O1C A; 3IMI A; 5CS2 A; 3OJ7 A; 3BL7 A; 5I2E A; 4EGU A; 3O1Z A; 5ED6 A; 1XMM A; 4EQG A; 4NDF A; 4NK0 A; 4YKL B; 4NDI A; 2Q4L A; 1ST0 A; 1AV5 A; 6RHN A; 3N1S A; 3LB5 A; 3R6F A; 1KPA A; 4NDH A; 3FIT A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
