1E93 | Genus

Total Genus 154

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	154
sequence length	476
structure length	475
Chain Sequence	KKLTTAAGAPVVDNNNVITAGPRGPMLLQDVWFLEKLAHFDREVIPERRHAKGSGAFGTFTVTHDITKYTRAKIFSEVGKKTEMFARFSTVAGERGAADAERDIRGFALKFYTEEGNWDMVGNNTPVFYLRDPLKFPDLNHIVKRDPRTNMRNMAYKWDFFSHLPESLHQLTIDMSDRGLPLSYRFVHGFGSHTYSFINKDNERFWVKFHFRCQQGIKNLMDDEAEALVGKDRESSQRDLFEAIKRGDYPRWKLQIQIMPEKEASTVPYNPFDLTKVWPHADYPLMDVGYFELNRNPDNYFSDVEQAAFSPANIVPGISFSPDKMLQGRLFSYGDAHRYRLGVNHHQIPVNAPKCPFHNYHRDGAMRVDGNSGNGITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDYFSQPRALYELLSDDEHQRMFARIAGELSQASKETQQRQIDLFTKVHPEYGAGVEKAIKVLE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Proteus mirabilis
publication title	High-Resolution Structure and Biochemical Properties of a Recombinant Proteus Mirabilis Catalase Depleted in Iron. pubmed doi rcsb
molecule keywords	CATALASE
total genus	154
structure length	475
sequence length	476
ec nomenclature	ec 1.11.1.6: Catalase.
pdb deposition date	2000-10-05

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00199	Catalase	Catalase
A	PF06628	Catalase-rel	Catalase-related immune-responsive

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.180.10	Mainly Beta	Beta Barrel	Catalase HpII, Chain A, domain 1	Catalase core domain	1e93A00

1P7ZA 3P9RA 1A4EA 4BIMA 3EJ6A 4QORA 1IPHA 2XQ1A 4QONA 4E37A 4B40A 4ENWA 3PQ7A 1M85A 1GGFA 2ISAA 4QOQA 1MQFA 4ENSA 1GG9A 3P9QA 4ENRA 1GGEA 3DY5A 4QOMA 1P7YA 3TTVA 4ENQA 1GWEA 1F4JA 4BFLA 1GWHA 4B7AA 1GGJA 1QWLA 4AUMA 1P81A 4ENPA 2IQFA 2IUFA 3PQ5A 3TTWA 3HB6A 3ZJ5A 2CAGA 1U5UA 4B5KA 3PQ4A 4B2YA 1HBZA 3TTXA 1E93A 2XF2A 1QF7A 3ZJ4A 5BV2P 4AUEA 4CABA 3PQ6A 3PQ3A 4B31A 1QWSA 4QOLA 1H7KA 1M7SA 4ENUA 3VU3A 3P9PA 4AULA 4ENTA 1QWMA 3PQ2A 1SI8A 3PQ8A 4QOOA 1GGKA 1H6NA 2J2MA 3TTUA 1NM0A 4AJ9A 3P9SA 1GWFA 4QOPA 1GGHA 2A9EA 1CF9A 4ENVA 1P80A 4AUNA 3TTTA 1SY7A 2CAHA
chains in the Genus database with same CATH superfamily

1P7ZA 3P9RA 1A4EA 1DGHA 4BIMA 5GKNA 3EJ6A 4QORA 1IPHA 2XQ1A 4QONA 4E37A 4B40A 4ENWA 1DGBA 3NWLA 3PQ7A 1M85A 1GGFA 2ISAA 4QOQA 1MQFA 4ENSA 1GG9A 3P9QA 4ENRA 1GGEA 4BLCA 3DY5A 4QOMA 1P7YA 3RE8A 3TTVA 1TH2A 4ENQA 1GWEA 1F4JA 1TGUA 4BFLA 1GWHA 4B7AA 1GGJA 1QWLA 4AUMA 1P81A 4ENPA 2IQFA 1DGHB 2IUFA 3PQ5A 3TTWA 3E4YA 3RGSA 3HB6A 3ZJ5A 2CAGA 1U5UA 4B5KA 3J7BA 3PQ4A 4B2YA 1HBZA 3TTXA 1E93A 2XF2A 1QF7A 3ZJ4A 5BV2P 1DGFA 8CATA 4AUEA 4CABA 1TH3A 3PQ6A 3PQ3A 4B31A 1QWSA 4QOLA 1H7KA 1M7SA 4ENUA 3VU3A 3P9PA 4AULA 4ENTA 1QWMA 3PQ2A 1QQWA 1SI8A 3PQ8A 4QOOA 1GGKA 7CATA 1H6NA 2J2MA 1TH4A 3E4WA 1DGGA 3TTUA 1NM0A 4AJ9A 3RGPA 3P9SA 1GWFA 4QOPA 1GGHA 2A9EA 1CF9A 4B7GA 4B7HA 4B7FA 4ENVA 1P80A 4AUNA 3TTTA 1SY7A 2CAHA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1P7Z A;  3P9R A;  1A4E A;  4BIM A;  3EJ6 A;  4QOR A;  1IPH A;  2XQ1 A;  4QON A;  4E37 A;  4B40 A;  4ENW A;  3PQ7 A;  1M85 A;  1GGF A;  2ISA A;  4QOQ A;  1MQF A;  4ENS A;  1GG9 A;  3P9Q A;  4ENR A;  1GGE A;  3DY5 A;  4QOM A;  1P7Y A;  3TTV A;  4ENQ A;  1GWE A;  1F4J A;  4BFL A;  1GWH A;  4B7A A;  1GGJ A;  1QWL A;  4AUM A;  1P81 A;  4ENP A;  2IQF A;  2IUF A;  3PQ5 A;  3TTW A;  3HB6 A;  3ZJ5 A;  2CAG A;  1U5U A;  4B5K A;  3PQ4 A;  4B2Y A;  1HBZ A;  3TTX A;  1E93 A;  2XF2 A;  1QF7 A;  3ZJ4 A;  5BV2 P;  4AUE A;  4CAB A;  3PQ6 A;  3PQ3 A;  4B31 A;  1QWS A;  4QOL A;  1H7K A;  1M7S A;  4ENU A;  3VU3 A;  3P9P A;  4AUL A;  4ENT A;  1QWM A;  3PQ2 A;  1SI8 A;  3PQ8 A;  4QOO A;  1GGK A;  1H6N A;  2J2M A;  3TTU A;  1NM0 A;  4AJ9 A;  3P9S A;  1GWF A;  4QOP A;  1GGH A;  2A9E A;  1CF9 A;  4ENV A;  1P80 A;  4AUN A;  3TTT A;  1SY7 A;  2CAH A; 
#chains in the Genus database with same CATH topology
 1P7Z A;  3P9R A;  1A4E A;  1DGH A;  4BIM A;  5GKN A;  3EJ6 A;  4QOR A;  1IPH A;  2XQ1 A;  4QON A;  4E37 A;  4B40 A;  4ENW A;  1DGB A;  3NWL A;  3PQ7 A;  1M85 A;  1GGF A;  2ISA A;  4QOQ A;  1MQF A;  4ENS A;  1GG9 A;  3P9Q A;  4ENR A;  1GGE A;  4BLC A;  3DY5 A;  4QOM A;  1P7Y A;  3RE8 A;  3TTV A;  1TH2 A;  4ENQ A;  1GWE A;  1F4J A;  1TGU A;  4BFL A;  1GWH A;  4B7A A;  1GGJ A;  1QWL A;  4AUM A;  1P81 A;  4ENP A;  2IQF A;  1DGH B;  2IUF A;  3PQ5 A;  3TTW A;  3E4Y A;  3RGS A;  3HB6 A;  3ZJ5 A;  2CAG A;  1U5U A;  4B5K A;  3J7B A;  3PQ4 A;  4B2Y A;  1HBZ A;  3TTX A;  1E93 A;  2XF2 A;  1QF7 A;  3ZJ4 A;  5BV2 P;  1DGF A;  8CAT A;  4AUE A;  4CAB A;  1TH3 A;  3PQ6 A;  3PQ3 A;  4B31 A;  1QWS A;  4QOL A;  1H7K A;  1M7S A;  4ENU A;  3VU3 A;  3P9P A;  4AUL A;  4ENT A;  1QWM A;  3PQ2 A;  1QQW A;  1SI8 A;  3PQ8 A;  4QOO A;  1GGK A;  7CAT A;  1H6N A;  2J2M A;  1TH4 A;  3E4W A;  1DGG A;  3TTU A;  1NM0 A;  4AJ9 A;  3RGP A;  3P9S A;  1GWF A;  4QOP A;  1GGH A;  2A9E A;  1CF9 A;  4B7G A;  4B7H A;  4B7F A;  4ENV A;  1P80 A;  4AUN A;  3TTT A;  1SY7 A;  2CAH A; 
#chains in the Genus database with same CATH homology
 1P7Z A;  3P9R A;  1A4E A;  4BIM A;  3EJ6 A;  4QOR A;  1IPH A;  2XQ1 A;  4QON A;  4E37 A;  4B40 A;  4ENW A;  3PQ7 A;  1M85 A;  1GGF A;  2ISA A;  4QOQ A;  1MQF A;  4ENS A;  1GG9 A;  3P9Q A;  4ENR A;  1GGE A;  3DY5 A;  4QOM A;  1P7Y A;  3TTV A;  4ENQ A;  1GWE A;  1F4J A;  4BFL A;  1GWH A;  4B7A A;  1GGJ A;  1QWL A;  4AUM A;  1P81 A;  4ENP A;  2IQF A;  2IUF A;  3PQ5 A;  3TTW A;  3HB6 A;  3ZJ5 A;  2CAG A;  1U5U A;  4B5K A;  3PQ4 A;  4B2Y A;  1HBZ A;  3TTX A;  1E93 A;  2XF2 A;  1QF7 A;  3ZJ4 A;  5BV2 P;  4AUE A;  4CAB A;  3PQ6 A;  3PQ3 A;  4B31 A;  1QWS A;  4QOL A;  1H7K A;  1M7S A;  4ENU A;  3VU3 A;  3P9P A;  4AUL A;  4ENT A;  1QWM A;  3PQ2 A;  1SI8 A;  3PQ8 A;  4QOO A;  1GGK A;  1H6N A;  2J2M A;  3TTU A;  1NM0 A;  4AJ9 A;  3P9S A;  1GWF A;  4QOP A;  1GGH A;  2A9E A;  1CF9 A;  4ENV A;  1P80 A;  4AUN A;  3TTT A;  1SY7 A;  2CAH A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1E93A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations