1SI8A

Crystal structure of e. faecalis catalase
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
474
structure length
474
Chain Sequence
b'QHLTTSQGSPVGDNQNSLTAGEFGPVLIQDVHLLEKLAHFNRERVPERVVHAKGAGAHGIFKVSQSMAQYTKADFLSEVGKETPLFARFSTVAGELGSSDTLRDPRGFALKFYTDEGNYDLVGNNTPIFFIRDAIKFPDFIHSQKRNPRTHLKSPEAVWDFWSHSPESLHQVTILMSDRGIPLSFRHMHGFGSHTFKWVNAAGEVFFVKYHFKTNQGIKNLESQLAEEIAGKNPDFHIEDLHNAIENQEFPSWTLSVQIIPYADALTMKETLFDVTKTVSQKEYPLIEVGTMTLNRNPENYFAEVEQVTFSPGNFVPGIEASPDKLLQGRLFAYGDAHRHRVGANSHQLPINQAKAPVNNYQKDGNMRFNNGNSEINYEPNSYTETPKEDPTAKISSFEVEGNVGNYSYNQDHFTQANALYNLLPSEEKENLINNIAASLGQVKNQEIIARQIDLFTRVNPEYGARVAQAIKQQ'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Catalase
publication title The three-dimensional structure of catalase from Enterococcus faecalis.
pubmed doi rcsb
source organism Enterococcus faecalis
molecule tags Oxidoreductase
total genus 151
structure length 474
sequence length 474
chains with identical sequence B, C, D
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2004-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 1si8A00
4QONA 1QWSA 4ENQA 1E93A 3DY5A 3TTVA 2CAGA 4CABA 1H6NA 4ENUA 4E37A 2XF2A 4AUMA 1P7ZA 4QOMA 1QWMA 3TTWA 3ZJ5A 5BV2P 1SY7A 3TTUA 4QOOA 3PQ5A 2ISAA 2XQ1A 3PQ7A 1NM0A 1P81A 1HBZA 3VU3A 4B5KA 1A4EA 4B7AA 1GGJA 3ZJ4A 1GWEA 4AULA 2J2MA 3PQ4A 2CAHA 4ENRA 1GG9A 3HB6A 4B40A 1H7KA 4QOPA 4BIMA 1F4JA 1U5UA 4ENPA 4AUEA 4ENTA 1GGEA 1QWLA 1GGHA 1P7YA 1QF7A 3PQ2A 3TTTA 2IQFA 3PQ8A 3P9SA 1GWFA 3PQ6A 4ENVA 3EJ6A 3TTXA 4B31A 4ENSA 1CF9A 3P9RA 1P80A 1GWHA 4B2YA 1M85A 4BFLA 4AUNA 1SI8A 1M7SA 1MQFA 3PQ3A 4ENWA 4AJ9A 1GGKA 4QORA 3P9QA 1IPHA 1GGFA 3P9PA 4QOLA 2IUFA 4QOQA 2A9EA
chains in the Genus database with same CATH superfamily
4QONA 1QWSA 4ENQA 1E93A 3DY5A 3TTVA 2CAGA 1TH3A 4CABA 1H6NA 4ENUA 4E37A 3E4WA 1DGHA 2XF2A 4AUMA 1P7ZA 4QOMA 1QWMA 3TTWA 3ZJ5A 5BV2P 1SY7A 3TTUA 4QOOA 3PQ5A 2ISAA 2XQ1A 3PQ7A 1NM0A 1P81A 1HBZA 3VU3A 4B5KA 1A4EA 4B7AA 1GGJA 3ZJ4A 1GWEA 4AULA 2J2MA 3PQ4A 2CAHA 5GKNA 4ENRA 1GG9A 1DGFA 3HB6A 4B7HA 4B40A 1H7KA 4QOPA 4BIMA 1F4JA 1U5UA 4ENPA 4AUEA 4ENTA 1GGEA 1QQWA 1DGGA 3RE8A 8CATA 1QWLA 1GGHA 1P7YA 1QF7A 3E4YA 3PQ2A 3TTTA 2IQFA 3PQ8A 3P9SA 1GWFA 3PQ6A 4ENVA 1TH2A 3EJ6A 3TTXA 4B31A 3RGSA 4ENSA 1CF9A 1DGBA 3P9RA 1P80A 1GWHA 3NWLA 4B2YA 1M85A 4BFLA 1TH4A 4AUNA 1SI8A 3RGPA 1M7SA 1MQFA 3PQ3A 3J7BA 4ENWA 4BLCA 4AJ9A 1GGKA 4QORA 3P9QA 4B7GA 1IPHA 1GGFA 1TGUA 3P9PA 4QOLA 1DGHB 2IUFA 7CATA 4QOQA 2A9EA 4B7FA
chains in the Genus database with same CATH topology
4QONA 1QWSA 4ENQA 1E93A 3DY5A 3TTVA 2CAGA 4CABA 1H6NA 4ENUA 4E37A 2XF2A 4AUMA 1P7ZA 4QOMA 1QWMA 3TTWA 3ZJ5A 5BV2P 1SY7A 3TTUA 4QOOA 3PQ5A 2ISAA 2XQ1A 3PQ7A 1NM0A 1P81A 1HBZA 3VU3A 4B5KA 1A4EA 4B7AA 1GGJA 3ZJ4A 1GWEA 4AULA 2J2MA 3PQ4A 2CAHA 4ENRA 1GG9A 3HB6A 4B40A 1H7KA 4QOPA 4BIMA 1F4JA 1U5UA 4ENPA 4AUEA 4ENTA 1GGEA 1QWLA 1GGHA 1P7YA 1QF7A 3PQ2A 3TTTA 2IQFA 3PQ8A 3P9SA 1GWFA 3PQ6A 4ENVA 3EJ6A 3TTXA 4B31A 4ENSA 1CF9A 3P9RA 1P80A 1GWHA 4B2YA 1M85A 4BFLA 4AUNA 1SI8A 1M7SA 1MQFA 3PQ3A 4ENWA 4AJ9A 1GGKA 4QORA 3P9QA 1IPHA 1GGFA 3P9PA 4QOLA 2IUFA 4QOQA 2A9EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QON A;  1QWS A;  4ENQ A;  1E93 A;  3DY5 A;  3TTV A;  2CAG A;  4CAB A;  1H6N A;  4ENU A;  4E37 A;  2XF2 A;  4AUM A;  1P7Z A;  4QOM A;  1QWM A;  3TTW A;  3ZJ5 A;  5BV2 P;  1SY7 A;  3TTU A;  4QOO A;  3PQ5 A;  2ISA A;  2XQ1 A;  3PQ7 A;  1NM0 A;  1P81 A;  1HBZ A;  3VU3 A;  4B5K A;  1A4E A;  4B7A A;  1GGJ A;  3ZJ4 A;  1GWE A;  4AUL A;  2J2M A;  3PQ4 A;  2CAH A;  4ENR A;  1GG9 A;  3HB6 A;  4B40 A;  1H7K A;  4QOP A;  4BIM A;  1F4J A;  1U5U A;  4ENP A;  4AUE A;  4ENT A;  1GGE A;  1QWL A;  1GGH A;  1P7Y A;  1QF7 A;  3PQ2 A;  3TTT A;  2IQF A;  3PQ8 A;  3P9S A;  1GWF A;  3PQ6 A;  4ENV A;  3EJ6 A;  3TTX A;  4B31 A;  4ENS A;  1CF9 A;  3P9R A;  1P80 A;  1GWH A;  4B2Y A;  1M85 A;  4BFL A;  4AUN A;  1SI8 A;  1M7S A;  1MQF A;  3PQ3 A;  4ENW A;  4AJ9 A;  1GGK A;  4QOR A;  3P9Q A;  1IPH A;  1GGF A;  3P9P A;  4QOL A;  2IUF A;  4QOQ A;  2A9E A; 
#chains in the Genus database with same CATH topology
 4QON A;  1QWS A;  4ENQ A;  1E93 A;  3DY5 A;  3TTV A;  2CAG A;  1TH3 A;  4CAB A;  1H6N A;  4ENU A;  4E37 A;  3E4W A;  1DGH A;  2XF2 A;  4AUM A;  1P7Z A;  4QOM A;  1QWM A;  3TTW A;  3ZJ5 A;  5BV2 P;  1SY7 A;  3TTU A;  4QOO A;  3PQ5 A;  2ISA A;  2XQ1 A;  3PQ7 A;  1NM0 A;  1P81 A;  1HBZ A;  3VU3 A;  4B5K A;  1A4E A;  4B7A A;  1GGJ A;  3ZJ4 A;  1GWE A;  4AUL A;  2J2M A;  3PQ4 A;  2CAH A;  5GKN A;  4ENR A;  1GG9 A;  1DGF A;  3HB6 A;  4B7H A;  4B40 A;  1H7K A;  4QOP A;  4BIM A;  1F4J A;  1U5U A;  4ENP A;  4AUE A;  4ENT A;  1GGE A;  1QQW A;  1DGG A;  3RE8 A;  8CAT A;  1QWL A;  1GGH A;  1P7Y A;  1QF7 A;  3E4Y A;  3PQ2 A;  3TTT A;  2IQF A;  3PQ8 A;  3P9S A;  1GWF A;  3PQ6 A;  4ENV A;  1TH2 A;  3EJ6 A;  3TTX A;  4B31 A;  3RGS A;  4ENS A;  1CF9 A;  1DGB A;  3P9R A;  1P80 A;  1GWH A;  3NWL A;  4B2Y A;  1M85 A;  4BFL A;  1TH4 A;  4AUN A;  1SI8 A;  3RGP A;  1M7S A;  1MQF A;  3PQ3 A;  3J7B A;  4ENW A;  4BLC A;  4AJ9 A;  1GGK A;  4QOR A;  3P9Q A;  4B7G A;  1IPH A;  1GGF A;  1TGU A;  3P9P A;  4QOL A;  1DGH B;  2IUF A;  7CAT A;  4QOQ A;  2A9E A;  4B7F A; 
#chains in the Genus database with same CATH homology
 4QON A;  1QWS A;  4ENQ A;  1E93 A;  3DY5 A;  3TTV A;  2CAG A;  4CAB A;  1H6N A;  4ENU A;  4E37 A;  2XF2 A;  4AUM A;  1P7Z A;  4QOM A;  1QWM A;  3TTW A;  3ZJ5 A;  5BV2 P;  1SY7 A;  3TTU A;  4QOO A;  3PQ5 A;  2ISA A;  2XQ1 A;  3PQ7 A;  1NM0 A;  1P81 A;  1HBZ A;  3VU3 A;  4B5K A;  1A4E A;  4B7A A;  1GGJ A;  3ZJ4 A;  1GWE A;  4AUL A;  2J2M A;  3PQ4 A;  2CAH A;  4ENR A;  1GG9 A;  3HB6 A;  4B40 A;  1H7K A;  4QOP A;  4BIM A;  1F4J A;  1U5U A;  4ENP A;  4AUE A;  4ENT A;  1GGE A;  1QWL A;  1GGH A;  1P7Y A;  1QF7 A;  3PQ2 A;  3TTT A;  2IQF A;  3PQ8 A;  3P9S A;  1GWF A;  3PQ6 A;  4ENV A;  3EJ6 A;  3TTX A;  4B31 A;  4ENS A;  1CF9 A;  3P9R A;  1P80 A;  1GWH A;  4B2Y A;  1M85 A;  4BFL A;  4AUN A;  1SI8 A;  1M7S A;  1MQF A;  3PQ3 A;  4ENW A;  4AJ9 A;  1GGK A;  4QOR A;  3P9Q A;  1IPH A;  1GGF A;  3P9P A;  4QOL A;  2IUF A;  4QOQ A;  2A9E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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