2CAGA

Catalase compound ii
Total Genus 139
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
139
sequence length
475
structure length
474
Chain Sequence
KKLTTAAGAPVVDNNNVITAGPRGPMLLQDVWFLEKLAHFDREVIPERRHAKGSGAFGTFTVTHDITKYTRAKIFSEVGKKTEMFARFSTVAGERGAADAERDIRGFALKFYTEEGNWDMVGNNTPVFYLRDPLKFPDLNHIVKRDPRTNMRNMAYKWDFFSHLPESLHQLTIDMSDRGLPLSYRFVHGFGSHTYSFINKDNERFWVKFHFRCQQGIKNLMDDEAEALVGKDRESSQRDLFEAIERGDYPRWKLQIQIMPEKEASTVPYNPFDLTKVWPHADYPLMDVGYFELNRNPDNYFSDVEQAAFSPANIVPGISFSPDKMLQGRLFSYGDAHRYRLGVNHHQIPVNAPKCPFHNYHRDGAMRVDGNSGNGITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDYFSQPRALYELLSDDEHQRMFARIAGELSQASKETQQRQIDLFTKVHPEYGAGVEKAIKVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase (h2o2 acceptor)
molecule keywords CATALASE COMPOUND II
publication title Ferryl intermediates of catalase captured by time-resolved Weissenberg crystallography and UV-VIS spectroscopy.
pubmed doi rcsb
total genus 139
structure length 474
sequence length 475
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 1996-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 2cagA00
1CF9A 3DY5A 3P9RA 3HB6A 1GGEA 2XF2A 5BV2P 1GWEA 1P7ZA 1QF7A 1GGHA 1GG9A 4QORA 1QWMA 1P81A 1GWHA 2ISAA 3PQ6A 3P9SA 3TTVA 4ENPA 1MQFA 1GWFA 4CABA 2CAHA 4QOQA 1H7KA 3PQ8A 4B40A 4QOPA 4AJ9A 4ENQA 4AUNA 1NM0A 1HBZA 1GGFA 1GGJA 3P9PA 2IUFA 2CAGA 4B2YA 1SY7A 4B5KA 3PQ5A 1QWSA 4AUEA 3PQ7A 4BFLA 1F4JA 4QOLA 4ENSA 3TTWA 3TTUA 3TTXA 3EJ6A 2A9EA 1E93A 2J2MA 4AULA 1U5UA 3VU3A 4ENRA 3ZJ4A 3PQ2A 1QWLA 4E37A 4ENUA 4ENVA 4B7AA 3ZJ5A 4QOMA 1M7SA 3TTTA 1SI8A 4QONA 3P9QA 1M85A 2IQFA 2XQ1A 4QOOA 1IPHA 3PQ4A 4AUMA 1P80A 1GGKA 4ENTA 4ENWA 1P7YA 3PQ3A 4B31A 4BIMA 1H6NA 1A4EA
chains in the Genus database with same CATH superfamily
1QQWA 1CF9A 3DY5A 3P9RA 3HB6A 1GGEA 2XF2A 3RGPA 1DGBA 5BV2P 1GWEA 1P7ZA 1QF7A 1GGHA 1GG9A 4QORA 1QWMA 1P81A 1GWHA 2ISAA 3PQ6A 3P9SA 3TTVA 4ENPA 1MQFA 1GWFA 4CABA 2CAHA 4QOQA 1H7KA 3PQ8A 4B7GA 3RGSA 1TH2A 4B40A 4QOPA 4AJ9A 4ENQA 4AUNA 1NM0A 1HBZA 1GGFA 1GGJA 8CATA 3P9PA 1DGHB 2IUFA 2CAGA 7CATA 4B2YA 1SY7A 4B5KA 3PQ5A 1QWSA 4AUEA 3PQ7A 4BFLA 1F4JA 4QOLA 4ENSA 3TTWA 1DGGA 3TTUA 3TTXA 3EJ6A 1TH4A 3E4WA 4BLCA 3E4YA 2A9EA 1DGHA 1E93A 3NWLA 2J2MA 1DGFA 4AULA 1U5UA 3VU3A 4ENRA 3ZJ4A 3PQ2A 1QWLA 4E37A 1TGUA 3J7BA 4ENUA 4ENVA 4B7AA 3ZJ5A 5GKNA 4QOMA 3RE8A 4B7FA 1M7SA 3TTTA 1SI8A 4QONA 3P9QA 1M85A 2IQFA 2XQ1A 1TH3A 4QOOA 1IPHA 3PQ4A 4AUMA 1P80A 1GGKA 4ENTA 4ENWA 1P7YA 4B7HA 3PQ3A 4B31A 4BIMA 1H6NA 1A4EA
chains in the Genus database with same CATH topology
1CF9A 3DY5A 3P9RA 3HB6A 1GGEA 2XF2A 5BV2P 1GWEA 1P7ZA 1QF7A 1GGHA 1GG9A 4QORA 1QWMA 1P81A 1GWHA 2ISAA 3PQ6A 3P9SA 3TTVA 4ENPA 1MQFA 1GWFA 4CABA 2CAHA 4QOQA 1H7KA 3PQ8A 4B40A 4QOPA 4AJ9A 4ENQA 4AUNA 1NM0A 1HBZA 1GGFA 1GGJA 3P9PA 2IUFA 2CAGA 4B2YA 1SY7A 4B5KA 3PQ5A 1QWSA 4AUEA 3PQ7A 4BFLA 1F4JA 4QOLA 4ENSA 3TTWA 3TTUA 3TTXA 3EJ6A 2A9EA 1E93A 2J2MA 4AULA 1U5UA 3VU3A 4ENRA 3ZJ4A 3PQ2A 1QWLA 4E37A 4ENUA 4ENVA 4B7AA 3ZJ5A 4QOMA 1M7SA 3TTTA 1SI8A 4QONA 3P9QA 1M85A 2IQFA 2XQ1A 4QOOA 1IPHA 3PQ4A 4AUMA 1P80A 1GGKA 4ENTA 4ENWA 1P7YA 3PQ3A 4B31A 4BIMA 1H6NA 1A4EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CF9 A;  3DY5 A;  3P9R A;  3HB6 A;  1GGE A;  2XF2 A;  5BV2 P;  1GWE A;  1P7Z A;  1QF7 A;  1GGH A;  1GG9 A;  4QOR A;  1QWM A;  1P81 A;  1GWH A;  2ISA A;  3PQ6 A;  3P9S A;  3TTV A;  4ENP A;  1MQF A;  1GWF A;  4CAB A;  2CAH A;  4QOQ A;  1H7K A;  3PQ8 A;  4B40 A;  4QOP A;  4AJ9 A;  4ENQ A;  4AUN A;  1NM0 A;  1HBZ A;  1GGF A;  1GGJ A;  3P9P A;  2IUF A;  2CAG A;  4B2Y A;  1SY7 A;  4B5K A;  3PQ5 A;  1QWS A;  4AUE A;  3PQ7 A;  4BFL A;  1F4J A;  4QOL A;  4ENS A;  3TTW A;  3TTU A;  3TTX A;  3EJ6 A;  2A9E A;  1E93 A;  2J2M A;  4AUL A;  1U5U A;  3VU3 A;  4ENR A;  3ZJ4 A;  3PQ2 A;  1QWL A;  4E37 A;  4ENU A;  4ENV A;  4B7A A;  3ZJ5 A;  4QOM A;  1M7S A;  3TTT A;  1SI8 A;  4QON A;  3P9Q A;  1M85 A;  2IQF A;  2XQ1 A;  4QOO A;  1IPH A;  3PQ4 A;  4AUM A;  1P80 A;  1GGK A;  4ENT A;  4ENW A;  1P7Y A;  3PQ3 A;  4B31 A;  4BIM A;  1H6N A;  1A4E A; 
#chains in the Genus database with same CATH topology
 1QQW A;  1CF9 A;  3DY5 A;  3P9R A;  3HB6 A;  1GGE A;  2XF2 A;  3RGP A;  1DGB A;  5BV2 P;  1GWE A;  1P7Z A;  1QF7 A;  1GGH A;  1GG9 A;  4QOR A;  1QWM A;  1P81 A;  1GWH A;  2ISA A;  3PQ6 A;  3P9S A;  3TTV A;  4ENP A;  1MQF A;  1GWF A;  4CAB A;  2CAH A;  4QOQ A;  1H7K A;  3PQ8 A;  4B7G A;  3RGS A;  1TH2 A;  4B40 A;  4QOP A;  4AJ9 A;  4ENQ A;  4AUN A;  1NM0 A;  1HBZ A;  1GGF A;  1GGJ A;  8CAT A;  3P9P A;  1DGH B;  2IUF A;  2CAG A;  7CAT A;  4B2Y A;  1SY7 A;  4B5K A;  3PQ5 A;  1QWS A;  4AUE A;  3PQ7 A;  4BFL A;  1F4J A;  4QOL A;  4ENS A;  3TTW A;  1DGG A;  3TTU A;  3TTX A;  3EJ6 A;  1TH4 A;  3E4W A;  4BLC A;  3E4Y A;  2A9E A;  1DGH A;  1E93 A;  3NWL A;  2J2M A;  1DGF A;  4AUL A;  1U5U A;  3VU3 A;  4ENR A;  3ZJ4 A;  3PQ2 A;  1QWL A;  4E37 A;  1TGU A;  3J7B A;  4ENU A;  4ENV A;  4B7A A;  3ZJ5 A;  5GKN A;  4QOM A;  3RE8 A;  4B7F A;  1M7S A;  3TTT A;  1SI8 A;  4QON A;  3P9Q A;  1M85 A;  2IQF A;  2XQ1 A;  1TH3 A;  4QOO A;  1IPH A;  3PQ4 A;  4AUM A;  1P80 A;  1GGK A;  4ENT A;  4ENW A;  1P7Y A;  4B7H A;  3PQ3 A;  4B31 A;  4BIM A;  1H6N A;  1A4E A; 
#chains in the Genus database with same CATH homology
 1CF9 A;  3DY5 A;  3P9R A;  3HB6 A;  1GGE A;  2XF2 A;  5BV2 P;  1GWE A;  1P7Z A;  1QF7 A;  1GGH A;  1GG9 A;  4QOR A;  1QWM A;  1P81 A;  1GWH A;  2ISA A;  3PQ6 A;  3P9S A;  3TTV A;  4ENP A;  1MQF A;  1GWF A;  4CAB A;  2CAH A;  4QOQ A;  1H7K A;  3PQ8 A;  4B40 A;  4QOP A;  4AJ9 A;  4ENQ A;  4AUN A;  1NM0 A;  1HBZ A;  1GGF A;  1GGJ A;  3P9P A;  2IUF A;  2CAG A;  4B2Y A;  1SY7 A;  4B5K A;  3PQ5 A;  1QWS A;  4AUE A;  3PQ7 A;  4BFL A;  1F4J A;  4QOL A;  4ENS A;  3TTW A;  3TTU A;  3TTX A;  3EJ6 A;  2A9E A;  1E93 A;  2J2M A;  4AUL A;  1U5U A;  3VU3 A;  4ENR A;  3ZJ4 A;  3PQ2 A;  1QWL A;  4E37 A;  4ENU A;  4ENV A;  4B7A A;  3ZJ5 A;  4QOM A;  1M7S A;  3TTT A;  1SI8 A;  4QON A;  3P9Q A;  1M85 A;  2IQF A;  2XQ1 A;  4QOO A;  1IPH A;  3PQ4 A;  4AUM A;  1P80 A;  1GGK A;  4ENT A;  4ENW A;  1P7Y A;  3PQ3 A;  4B31 A;  4BIM A;  1H6N A;  1A4E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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