4QOQA

Structure of bacillus pumilus catalase with guaiacol bound
Total Genus 152
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
152
sequence length
481
structure length
481
Chain Sequence
b'HKNLTTNQGVPVGDNQNSRTAGHRGPSFLDDYHLIEKLAHFDRERIPERVVHARGAGAYGVFEVENSMEKHTRAAFLSEEGKQTDVFVRFSTVIHPKGSPETLRDPRGFAVKFYTEEGNYDLVGNNLPIFFIRDALKFPDMVHSLKPDPVTNIQDPDRYWDFMTLTPESTHMLTWLFSDEGIPANYAEMRGSGVHTFRWVNKYGETKYVKYHWRPSEGIRNLSMEEAAEIQANDFQHATRDLYDRIEKGNYPAWDLYVQLMPLSDYDELDYDPCDPTKTWSEEDYPLQKVGRMTLNRNPENFFAETEQAAFTPSALVPGIEASEDKLLQGRLFSYPDTQRHRLGANYMRIPVNCPYAPVHNNQQDGFMTTTRPSGHINYEPNRYDDQPKENPHYKESEPVLHGDRMVRQKIEKPNDFKQAGEKYRSYSEEEKQALIKNLTADLKGVNEKTKLLAICNFYRADEDYGQRLADSLGVDIRSYL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Catalase
publication title Unprecedented access of phenolic substrates to the heme active site of a catalase: Substrate binding and peroxidase-like reactivity of Bacillus pumilus catalase monitored by X-ray crystallography and EPR spectroscopy.
pubmed doi rcsb
source organism Bacillus pumilus
molecule tags Oxidoreductase
total genus 152
structure length 481
sequence length 481
chains with identical sequence B, C, D
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2014-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 4qoqA00
3DY5A 5BV2P 2A9EA 4QOMA 4ENRA 1GG9A 1HBZA 1MQFA 4B31A 4B7AA 1SI8A 1GGJA 3P9SA 1QF7A 1QWMA 4CABA 1U5UA 4QOPA 4AULA 4E37A 3P9QA 3TTTA 3TTWA 3PQ3A 3ZJ4A 4ENTA 4ENSA 3TTUA 4AUNA 1GWHA 3PQ2A 3PQ6A 4B40A 3PQ4A 4AUEA 4AJ9A 4AUMA 1SY7A 1P80A 3P9RA 1GWEA 1GGKA 4B5KA 4ENUA 2ISAA 1M85A 3HB6A 3PQ7A 4ENVA 2J2MA 1H7KA 1QWLA 2CAGA 4QONA 3EJ6A 2IQFA 1A4EA 4QOOA 4BFLA 2CAHA 1QWSA 4B2YA 1M7SA 1GWFA 1GGEA 4BIMA 1IPHA 4ENPA 4QOQA 1P7YA 3ZJ5A 1NM0A 4ENQA 1E93A 2IUFA 1CF9A 3TTVA 4QOLA 4ENWA 3P9PA 2XF2A 1F4JA 1GGFA 2XQ1A 4QORA 1P81A 1P7ZA 3TTXA 3VU3A 1GGHA 1H6NA 3PQ8A 3PQ5A
chains in the Genus database with same CATH superfamily
3DY5A 5BV2P 2A9EA 4QOMA 4ENRA 1TH2A 1GG9A 1HBZA 1MQFA 4B31A 4B7AA 3RGPA 1SI8A 4B7GA 1GGJA 3P9SA 1QF7A 1QWMA 4CABA 1U5UA 4QOPA 4AULA 4E37A 3NWLA 3P9QA 1TGUA 3TTTA 3TTWA 3PQ3A 3ZJ4A 4ENTA 4ENSA 3E4YA 3TTUA 4BLCA 3RE8A 4AUNA 1GWHA 3PQ2A 3PQ6A 4B40A 3PQ4A 3E4WA 8CATA 4AUEA 1DGHB 4AJ9A 4AUMA 1SY7A 1P80A 3P9RA 1GWEA 1GGKA 5GKNA 4B5KA 4ENUA 2ISAA 1M85A 3HB6A 3PQ7A 4ENVA 2J2MA 1H7KA 1QWLA 2CAGA 4QONA 3EJ6A 1DGGA 7CATA 2IQFA 1A4EA 4B7FA 1TH4A 4QOOA 4BFLA 3RGSA 2CAHA 1QWSA 4B2YA 1M7SA 1GWFA 1GGEA 4BIMA 1IPHA 4ENPA 1DGHA 4QOQA 1P7YA 3ZJ5A 1NM0A 4ENQA 1E93A 2IUFA 1CF9A 3TTVA 4QOLA 4ENWA 3J7BA 3P9PA 1QQWA 2XF2A 4B7HA 1F4JA 1GGFA 2XQ1A 4QORA 1TH3A 1P81A 1DGBA 1P7ZA 3TTXA 3VU3A 1DGFA 1GGHA 1H6NA 3PQ8A 3PQ5A
chains in the Genus database with same CATH topology
3DY5A 5BV2P 2A9EA 4QOMA 4ENRA 1GG9A 1HBZA 1MQFA 4B31A 4B7AA 1SI8A 1GGJA 3P9SA 1QF7A 1QWMA 4CABA 1U5UA 4QOPA 4AULA 4E37A 3P9QA 3TTTA 3TTWA 3PQ3A 3ZJ4A 4ENTA 4ENSA 3TTUA 4AUNA 1GWHA 3PQ2A 3PQ6A 4B40A 3PQ4A 4AUEA 4AJ9A 4AUMA 1SY7A 1P80A 3P9RA 1GWEA 1GGKA 4B5KA 4ENUA 2ISAA 1M85A 3HB6A 3PQ7A 4ENVA 2J2MA 1H7KA 1QWLA 2CAGA 4QONA 3EJ6A 2IQFA 1A4EA 4QOOA 4BFLA 2CAHA 1QWSA 4B2YA 1M7SA 1GWFA 1GGEA 4BIMA 1IPHA 4ENPA 4QOQA 1P7YA 3ZJ5A 1NM0A 4ENQA 1E93A 2IUFA 1CF9A 3TTVA 4QOLA 4ENWA 3P9PA 2XF2A 1F4JA 1GGFA 2XQ1A 4QORA 1P81A 1P7ZA 3TTXA 3VU3A 1GGHA 1H6NA 3PQ8A 3PQ5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DY5 A;  5BV2 P;  2A9E A;  4QOM A;  4ENR A;  1GG9 A;  1HBZ A;  1MQF A;  4B31 A;  4B7A A;  1SI8 A;  1GGJ A;  3P9S A;  1QF7 A;  1QWM A;  4CAB A;  1U5U A;  4QOP A;  4AUL A;  4E37 A;  3P9Q A;  3TTT A;  3TTW A;  3PQ3 A;  3ZJ4 A;  4ENT A;  4ENS A;  3TTU A;  4AUN A;  1GWH A;  3PQ2 A;  3PQ6 A;  4B40 A;  3PQ4 A;  4AUE A;  4AJ9 A;  4AUM A;  1SY7 A;  1P80 A;  3P9R A;  1GWE A;  1GGK A;  4B5K A;  4ENU A;  2ISA A;  1M85 A;  3HB6 A;  3PQ7 A;  4ENV A;  2J2M A;  1H7K A;  1QWL A;  2CAG A;  4QON A;  3EJ6 A;  2IQF A;  1A4E A;  4QOO A;  4BFL A;  2CAH A;  1QWS A;  4B2Y A;  1M7S A;  1GWF A;  1GGE A;  4BIM A;  1IPH A;  4ENP A;  4QOQ A;  1P7Y A;  3ZJ5 A;  1NM0 A;  4ENQ A;  1E93 A;  2IUF A;  1CF9 A;  3TTV A;  4QOL A;  4ENW A;  3P9P A;  2XF2 A;  1F4J A;  1GGF A;  2XQ1 A;  4QOR A;  1P81 A;  1P7Z A;  3TTX A;  3VU3 A;  1GGH A;  1H6N A;  3PQ8 A;  3PQ5 A; 
#chains in the Genus database with same CATH topology
 3DY5 A;  5BV2 P;  2A9E A;  4QOM A;  4ENR A;  1TH2 A;  1GG9 A;  1HBZ A;  1MQF A;  4B31 A;  4B7A A;  3RGP A;  1SI8 A;  4B7G A;  1GGJ A;  3P9S A;  1QF7 A;  1QWM A;  4CAB A;  1U5U A;  4QOP A;  4AUL A;  4E37 A;  3NWL A;  3P9Q A;  1TGU A;  3TTT A;  3TTW A;  3PQ3 A;  3ZJ4 A;  4ENT A;  4ENS A;  3E4Y A;  3TTU A;  4BLC A;  3RE8 A;  4AUN A;  1GWH A;  3PQ2 A;  3PQ6 A;  4B40 A;  3PQ4 A;  3E4W A;  8CAT A;  4AUE A;  1DGH B;  4AJ9 A;  4AUM A;  1SY7 A;  1P80 A;  3P9R A;  1GWE A;  1GGK A;  5GKN A;  4B5K A;  4ENU A;  2ISA A;  1M85 A;  3HB6 A;  3PQ7 A;  4ENV A;  2J2M A;  1H7K A;  1QWL A;  2CAG A;  4QON A;  3EJ6 A;  1DGG A;  7CAT A;  2IQF A;  1A4E A;  4B7F A;  1TH4 A;  4QOO A;  4BFL A;  3RGS A;  2CAH A;  1QWS A;  4B2Y A;  1M7S A;  1GWF A;  1GGE A;  4BIM A;  1IPH A;  4ENP A;  1DGH A;  4QOQ A;  1P7Y A;  3ZJ5 A;  1NM0 A;  4ENQ A;  1E93 A;  2IUF A;  1CF9 A;  3TTV A;  4QOL A;  4ENW A;  3J7B A;  3P9P A;  1QQW A;  2XF2 A;  4B7H A;  1F4J A;  1GGF A;  2XQ1 A;  4QOR A;  1TH3 A;  1P81 A;  1DGB A;  1P7Z A;  3TTX A;  3VU3 A;  1DGF A;  1GGH A;  1H6N A;  3PQ8 A;  3PQ5 A; 
#chains in the Genus database with same CATH homology
 3DY5 A;  5BV2 P;  2A9E A;  4QOM A;  4ENR A;  1GG9 A;  1HBZ A;  1MQF A;  4B31 A;  4B7A A;  1SI8 A;  1GGJ A;  3P9S A;  1QF7 A;  1QWM A;  4CAB A;  1U5U A;  4QOP A;  4AUL A;  4E37 A;  3P9Q A;  3TTT A;  3TTW A;  3PQ3 A;  3ZJ4 A;  4ENT A;  4ENS A;  3TTU A;  4AUN A;  1GWH A;  3PQ2 A;  3PQ6 A;  4B40 A;  3PQ4 A;  4AUE A;  4AJ9 A;  4AUM A;  1SY7 A;  1P80 A;  3P9R A;  1GWE A;  1GGK A;  4B5K A;  4ENU A;  2ISA A;  1M85 A;  3HB6 A;  3PQ7 A;  4ENV A;  2J2M A;  1H7K A;  1QWL A;  2CAG A;  4QON A;  3EJ6 A;  2IQF A;  1A4E A;  4QOO A;  4BFL A;  2CAH A;  1QWS A;  4B2Y A;  1M7S A;  1GWF A;  1GGE A;  4BIM A;  1IPH A;  4ENP A;  4QOQ A;  1P7Y A;  3ZJ5 A;  1NM0 A;  4ENQ A;  1E93 A;  2IUF A;  1CF9 A;  3TTV A;  4QOL A;  4ENW A;  3P9P A;  2XF2 A;  1F4J A;  1GGF A;  2XQ1 A;  4QOR A;  1P81 A;  1P7Z A;  3TTX A;  3VU3 A;  1GGH A;  1H6N A;  3PQ8 A;  3PQ5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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