1FT5A

Crystal structure of the oxidized state of cytochrome c554 from nitrosomonas europaea
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
211
structure length
211
Chain Sequence
ADAPFEGRKKCSSCHKAQAQSWKDTAHAKAMESLKPNVKKEAKQKAKLDPAKDYTQDKDCVGCHVDGFGQKGGYTIESPKPMLTGVGCESCHGPGRNFRGDHRKSGQAFEKSGKKTPRKDLAKKGQDFHFEERCSACHLNYEGSPWKGAKAPYTPFTPEVDAKYTFKFDEMVKEVKAMHEHYKLEGVFEGEPKFKFHDEFQASAKPAKKGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title High-resolution structures of the oxidized and reduced states of cytochrome c554 from Nitrosomonas europaea.
pubmed doi rcsb
molecule tags Electron transport
molecule keywords CYTOCHROME C554
total genus 54
structure length 211
sequence length 211
ec nomenclature
pdb deposition date 2000-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13435 Cytochrome_C554 Cytochrome c554 and c-prime
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1130.10 Mainly Alpha Orthogonal Bundle Flavocytochrome C3; Chain A, domain 2 Flavocytochrome C3; Chain A 1ft5A00
1LJ1A 1P2HA 1JRYA 1E39A 3L1TA 3BNFA 1FS7A 1GU6A 1Y0PA 3F29A 2E81A 1M1QA 2K3VA 2RDZA 1D4DA 2VR0A 2RF7A 1FT6A 1P2EA 4Q0TA 2OT4A 3FO3A 3RKHA 3UU9A 1JRXA 1M1RA 1OAHA 3BNGA 1BVBA 1KSUA 2B7RA 4L38A 2ZO5A 1KSSA 3S7WA 3SXQA 1Q9IA 3GM6A 1D4EA 1SP3A 3OWMA 3TORA 3BNHA 2E80A 1QJDA 4L3YA 4Q17A 3TTBA 1QO8A 4Q1OA 3LG1A 4Q5CA 3D1IA 2J7AA 2B7SA 3BNJA 4L3ZA 4WJYA 1M1PA 1M64A 1JRZA 4Q4UA 1FS8A 3SCEA 1FT5A 1FS9A 4Q5BA 1JNIA 4L3XA 1D4CA 3MMOA 3UBRA 1QDBA 3LGQA
chains in the Genus database with same CATH superfamily
1LJ1A 1P2HA 1JRYA 1E39A 3L1TA 3BNFA 1FS7A 1GU6A 1Y0PA 3F29A 2E81A 1M1QA 2K3VA 2RDZA 1D4DA 2CZSA 2RF7A 1FT6A 1P2EA 2VR0A 4Q0TA 3FO3A 3RKHA 3UU9A 1JRXA 1M1RA 1OAHA 3BNGA 1BVBA 1KSUA 2B7RA 4L38A 2ZO5A 1KSSA 3S7WA 3SXQA 1Q9IA 3GM6A 1D4EA 1SP3A 3OWMA 3TORA 3BNHA 2E80A 1QJDA 4L3YA 4Q17A 3TTBA 1QO8A 4Q1OA 3LG1A 4Q5CA 3D1IA 2J7AA 2B7SA 3BNJA 4L3ZA 4WJYA 1M1PA 1M64A 1JRZA 4Q4UA 1FS8A 3SCEA 1FT5A 1FS9A 4Q5BA 1JNIA 4L3XA 1D4CA 3MMOA 2OT4A 3UBRA 1QDBA 3LGQA
chains in the Genus database with same CATH topology
1LJ1A 1P2HA 1JRYA 1E39A 3L1TA 3BNFA 1FS7A 1GU6A 1Y0PA 3F29A 2E81A 1M1QA 2K3VA 2RDZA 1D4DA 2VR0A 2RF7A 1FT6A 1P2EA 4Q0TA 2OT4A 3FO3A 3RKHA 3UU9A 1JRXA 1M1RA 1OAHA 3BNGA 1BVBA 1KSUA 2B7RA 4L38A 2ZO5A 1KSSA 3S7WA 3SXQA 1Q9IA 3GM6A 1D4EA 1SP3A 3OWMA 3TORA 3BNHA 2E80A 1QJDA 4L3YA 4Q17A 3TTBA 1QO8A 4Q1OA 3LG1A 4Q5CA 3D1IA 2J7AA 2B7SA 3BNJA 4L3ZA 4WJYA 1M1PA 1M64A 1JRZA 4Q4UA 1FS8A 3SCEA 1FT5A 1FS9A 4Q5BA 1JNIA 4L3XA 1D4CA 3MMOA 3UBRA 1QDBA 3LGQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LJ1 A;  1P2H A;  1JRY A;  1E39 A;  3L1T A;  3BNF A;  1FS7 A;  1GU6 A;  1Y0P A;  3F29 A;  2E81 A;  1M1Q A;  2K3V A;  2RDZ A;  1D4D A;  2VR0 A;  2RF7 A;  1FT6 A;  1P2E A;  4Q0T A;  2OT4 A;  3FO3 A;  3RKH A;  3UU9 A;  1JRX A;  1M1R A;  1OAH A;  3BNG A;  1BVB A;  1KSU A;  2B7R A;  4L38 A;  2ZO5 A;  1KSS A;  3S7W A;  3SXQ A;  1Q9I A;  3GM6 A;  1D4E A;  1SP3 A;  3OWM A;  3TOR A;  3BNH A;  2E80 A;  1QJD A;  4L3Y A;  4Q17 A;  3TTB A;  1QO8 A;  4Q1O A;  3LG1 A;  4Q5C A;  3D1I A;  2J7A A;  2B7S A;  3BNJ A;  4L3Z A;  4WJY A;  1M1P A;  1M64 A;  1JRZ A;  4Q4U A;  1FS8 A;  3SCE A;  1FT5 A;  1FS9 A;  4Q5B A;  1JNI A;  4L3X A;  1D4C A;  3MMO A;  3UBR A;  1QDB A;  3LGQ A; 
#chains in the Genus database with same CATH topology
 1LJ1 A;  1P2H A;  1JRY A;  1E39 A;  3L1T A;  3BNF A;  1FS7 A;  1GU6 A;  1Y0P A;  3F29 A;  2E81 A;  1M1Q A;  2K3V A;  2RDZ A;  1D4D A;  2CZS A;  2RF7 A;  1FT6 A;  1P2E A;  2VR0 A;  4Q0T A;  3FO3 A;  3RKH A;  3UU9 A;  1JRX A;  1M1R A;  1OAH A;  3BNG A;  1BVB A;  1KSU A;  2B7R A;  4L38 A;  2ZO5 A;  1KSS A;  3S7W A;  3SXQ A;  1Q9I A;  3GM6 A;  1D4E A;  1SP3 A;  3OWM A;  3TOR A;  3BNH A;  2E80 A;  1QJD A;  4L3Y A;  4Q17 A;  3TTB A;  1QO8 A;  4Q1O A;  3LG1 A;  4Q5C A;  3D1I A;  2J7A A;  2B7S A;  3BNJ A;  4L3Z A;  4WJY A;  1M1P A;  1M64 A;  1JRZ A;  4Q4U A;  1FS8 A;  3SCE A;  1FT5 A;  1FS9 A;  4Q5B A;  1JNI A;  4L3X A;  1D4C A;  3MMO A;  2OT4 A;  3UBR A;  1QDB A;  3LGQ A; 
#chains in the Genus database with same CATH homology
 1LJ1 A;  1P2H A;  1JRY A;  1E39 A;  3L1T A;  3BNF A;  1FS7 A;  1GU6 A;  1Y0P A;  3F29 A;  2E81 A;  1M1Q A;  2K3V A;  2RDZ A;  1D4D A;  2VR0 A;  2RF7 A;  1FT6 A;  1P2E A;  4Q0T A;  2OT4 A;  3FO3 A;  3RKH A;  3UU9 A;  1JRX A;  1M1R A;  1OAH A;  3BNG A;  1BVB A;  1KSU A;  2B7R A;  4L38 A;  2ZO5 A;  1KSS A;  3S7W A;  3SXQ A;  1Q9I A;  3GM6 A;  1D4E A;  1SP3 A;  3OWM A;  3TOR A;  3BNH A;  2E80 A;  1QJD A;  4L3Y A;  4Q17 A;  3TTB A;  1QO8 A;  4Q1O A;  3LG1 A;  4Q5C A;  3D1I A;  2J7A A;  2B7S A;  3BNJ A;  4L3Z A;  4WJY A;  1M1P A;  1M64 A;  1JRZ A;  4Q4U A;  1FS8 A;  3SCE A;  1FT5 A;  1FS9 A;  4Q5B A;  1JNI A;  4L3X A;  1D4C A;  3MMO A;  3UBR A;  1QDB A;  3LGQ A; 
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