2K3VA

Solution structure of a tetrahaem cytochrome from shewanella frigidimarina
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
86
structure length
86
Chain Sequence
ADETLAEFHVEMGGCENCHADGEPSKDGAYEFEQCQSCHGSLAEMDDNHKPHDGLLMCADCHAPHEAKVGEKPTCDTCHDDGRTAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
source organism Shewanella frigidimarina
publication title The solution structure of a tetraheme cytochrome from Shewanella frigidimarina reveals a novel family structural motif
pubmed doi rcsb
molecule keywords Tetraheme cytochrome c-type
total genus 9
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2008-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14537 Cytochrom_c3_2 Cytochrome c3
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1130.10 Mainly Alpha Orthogonal Bundle Flavocytochrome C3; Chain A, domain 2 Flavocytochrome C3; Chain A 2k3vA00
1JNIA 1GU6A 4L3YA 1Y0PA 3MMOA 4Q1OA 2RF7A 4L3ZA 3TTBA 1D4CA 3L1TA 1P2HA 1M1RA 4Q17A 1JRYA 1FS8A 1OAHA 1QO8A 2VR0A 2E80A 1QJDA 2ZO5A 3OWMA 1D4EA 1SP3A 4Q4UA 4L38A 4WJYA 1KSSA 1M1PA 1KSUA 3BNGA 3FO3A 1M1QA 3BNHA 1BVBA 2B7RA 3D1IA 3BNFA 4Q5BA 1FT6A 1FT5A 4L3XA 3GM6A 2RDZA 3SXQA 3BNJA 2J7AA 2E81A 1P2EA 2K3VA 3SCEA 1E39A 1D4DA 4Q5CA 3S7WA 3LGQA 2OT4A 3F29A 1FS7A 1QDBA 3LG1A 1FS9A 1JRZA 1LJ1A 3TORA 2B7SA 3UBRA 3UU9A 4Q0TA 1JRXA 3RKHA 1Q9IA 1M64A
chains in the Genus database with same CATH superfamily
1JNIA 1GU6A 4L3YA 1Y0PA 3MMOA 4Q1OA 2RF7A 4L3ZA 3TTBA 1D4CA 3L1TA 1P2HA 1M1RA 4Q17A 1JRYA 1FS8A 1OAHA 1QO8A 2VR0A 2E80A 1QJDA 2ZO5A 3OWMA 1D4EA 1SP3A 4Q4UA 4L38A 4WJYA 1KSSA 1M1PA 1KSUA 3BNGA 3FO3A 1M1QA 3BNHA 1BVBA 2B7RA 3D1IA 3BNFA 4Q5BA 1FT6A 1FT5A 4L3XA 3GM6A 2RDZA 3SXQA 3BNJA 2J7AA 2E81A 1P2EA 2K3VA 3SCEA 1E39A 1D4DA 4Q5CA 3S7WA 3LGQA 2OT4A 3F29A 1FS7A 1QDBA 3LG1A 1FS9A 1JRZA 1LJ1A 3TORA 2B7SA 3UBRA 3UU9A 4Q0TA 1JRXA 3RKHA 1Q9IA 2CZSA 1M64A
chains in the Genus database with same CATH topology
1JNIA 1GU6A 4L3YA 1Y0PA 3MMOA 4Q1OA 2RF7A 4L3ZA 3TTBA 1D4CA 3L1TA 1P2HA 1M1RA 4Q17A 1JRYA 1FS8A 1OAHA 1QO8A 2VR0A 2E80A 1QJDA 2ZO5A 3OWMA 1D4EA 1SP3A 4Q4UA 4L38A 4WJYA 1KSSA 1M1PA 1KSUA 3BNGA 3FO3A 1M1QA 3BNHA 1BVBA 2B7RA 3D1IA 3BNFA 4Q5BA 1FT6A 1FT5A 4L3XA 3GM6A 2RDZA 3SXQA 3BNJA 2J7AA 2E81A 1P2EA 2K3VA 3SCEA 1E39A 1D4DA 4Q5CA 3S7WA 3LGQA 2OT4A 3F29A 1FS7A 1QDBA 3LG1A 1FS9A 1JRZA 1LJ1A 3TORA 2B7SA 3UBRA 3UU9A 4Q0TA 1JRXA 3RKHA 1Q9IA 1M64A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JNI A;  1GU6 A;  4L3Y A;  1Y0P A;  3MMO A;  4Q1O A;  2RF7 A;  4L3Z A;  3TTB A;  1D4C A;  3L1T A;  1P2H A;  1M1R A;  4Q17 A;  1JRY A;  1FS8 A;  1OAH A;  1QO8 A;  2VR0 A;  2E80 A;  1QJD A;  2ZO5 A;  3OWM A;  1D4E A;  1SP3 A;  4Q4U A;  4L38 A;  4WJY A;  1KSS A;  1M1P A;  1KSU A;  3BNG A;  3FO3 A;  1M1Q A;  3BNH A;  1BVB A;  2B7R A;  3D1I A;  3BNF A;  4Q5B A;  1FT6 A;  1FT5 A;  4L3X A;  3GM6 A;  2RDZ A;  3SXQ A;  3BNJ A;  2J7A A;  2E81 A;  1P2E A;  2K3V A;  3SCE A;  1E39 A;  1D4D A;  4Q5C A;  3S7W A;  3LGQ A;  2OT4 A;  3F29 A;  1FS7 A;  1QDB A;  3LG1 A;  1FS9 A;  1JRZ A;  1LJ1 A;  3TOR A;  2B7S A;  3UBR A;  3UU9 A;  4Q0T A;  1JRX A;  3RKH A;  1Q9I A;  1M64 A; 
#chains in the Genus database with same CATH topology
 1JNI A;  1GU6 A;  4L3Y A;  1Y0P A;  3MMO A;  4Q1O A;  2RF7 A;  4L3Z A;  3TTB A;  1D4C A;  3L1T A;  1P2H A;  1M1R A;  4Q17 A;  1JRY A;  1FS8 A;  1OAH A;  1QO8 A;  2VR0 A;  2E80 A;  1QJD A;  2ZO5 A;  3OWM A;  1D4E A;  1SP3 A;  4Q4U A;  4L38 A;  4WJY A;  1KSS A;  1M1P A;  1KSU A;  3BNG A;  3FO3 A;  1M1Q A;  3BNH A;  1BVB A;  2B7R A;  3D1I A;  3BNF A;  4Q5B A;  1FT6 A;  1FT5 A;  4L3X A;  3GM6 A;  2RDZ A;  3SXQ A;  3BNJ A;  2J7A A;  2E81 A;  1P2E A;  2K3V A;  3SCE A;  1E39 A;  1D4D A;  4Q5C A;  3S7W A;  3LGQ A;  2OT4 A;  3F29 A;  1FS7 A;  1QDB A;  3LG1 A;  1FS9 A;  1JRZ A;  1LJ1 A;  3TOR A;  2B7S A;  3UBR A;  3UU9 A;  4Q0T A;  1JRX A;  3RKH A;  1Q9I A;  2CZS A;  1M64 A; 
#chains in the Genus database with same CATH homology
 1JNI A;  1GU6 A;  4L3Y A;  1Y0P A;  3MMO A;  4Q1O A;  2RF7 A;  4L3Z A;  3TTB A;  1D4C A;  3L1T A;  1P2H A;  1M1R A;  4Q17 A;  1JRY A;  1FS8 A;  1OAH A;  1QO8 A;  2VR0 A;  2E80 A;  1QJD A;  2ZO5 A;  3OWM A;  1D4E A;  1SP3 A;  4Q4U A;  4L38 A;  4WJY A;  1KSS A;  1M1P A;  1KSU A;  3BNG A;  3FO3 A;  1M1Q A;  3BNH A;  1BVB A;  2B7R A;  3D1I A;  3BNF A;  4Q5B A;  1FT6 A;  1FT5 A;  4L3X A;  3GM6 A;  2RDZ A;  3SXQ A;  3BNJ A;  2J7A A;  2E81 A;  1P2E A;  2K3V A;  3SCE A;  1E39 A;  1D4D A;  4Q5C A;  3S7W A;  3LGQ A;  2OT4 A;  3F29 A;  1FS7 A;  1QDB A;  3LG1 A;  1FS9 A;  1JRZ A;  1LJ1 A;  3TOR A;  2B7S A;  3UBR A;  3UU9 A;  4Q0T A;  1JRX A;  3RKH A;  1Q9I A;  1M64 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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