1JNIA

Structure of the napb subunit of the periplasmic nitrate reductase from haemophilus influenzae.
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
67
structure length
62
Chain Sequence
QPPMVPHSVANYQVTKNVNQCLNCHSPENSRLSGATRISPTHFMDRDGKVPRRYFCLQCHVS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The 1.25 A resolution structure of the diheme NapB subunit of soluble nitrate reductase reveals a novel cytochrome c fold with a stacked heme arrangement.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Haemophilus influenzae
molecule keywords DIHEME CYTOCHROME C NAPB
total genus 13
structure length 62
sequence length 67
ec nomenclature
pdb deposition date 2001-07-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1130.10 Mainly Alpha Orthogonal Bundle Flavocytochrome C3; Chain A, domain 2 Flavocytochrome C3; Chain A 1jniA00
3SCEA 1JNIA 3L1TA 1P2HA 1JRZA 1D4EA 1KSUA 4L3XA 2E81A 3GM6A 4Q17A 4Q0TA 1FS7A 3RKHA 1KSSA 3SXQA 1M64A 1QO8A 2VR0A 1GU6A 3LGQA 4Q5CA 3UU9A 4Q5BA 4WJYA 2K3VA 1OAHA 1Q9IA 4L3YA 2E80A 2OT4A 3MMOA 3BNHA 1Y0PA 4L3ZA 3TORA 1D4DA 1JRXA 1P2EA 2B7RA 3BNJA 4Q1OA 1SP3A 1E39A 3TTBA 3S7WA 1FT5A 2ZO5A 3UBRA 3F29A 4Q4UA 3OWMA 3FO3A 1D4CA 1JRYA 1FT6A 1FS9A 1FS8A 1M1RA 1BVBA 1M1QA 2B7SA 2RF7A 1LJ1A 2RDZA 3BNFA 1QJDA 3D1IA 1QDBA 1M1PA 3LG1A 4L38A 3BNGA 2J7AA
chains in the Genus database with same CATH superfamily
3SCEA 1JNIA 3L1TA 1P2HA 1JRZA 1D4EA 2CZSA 1KSUA 4L3XA 2E81A 3GM6A 4Q17A 4Q0TA 1FS7A 3RKHA 1KSSA 3SXQA 1M64A 1QO8A 2VR0A 1GU6A 3LGQA 4Q5CA 3UU9A 4Q5BA 4WJYA 2K3VA 1OAHA 1Q9IA 4L3YA 2E80A 2OT4A 3MMOA 3BNHA 1Y0PA 4L3ZA 3TORA 1D4DA 1JRXA 1P2EA 2B7RA 3BNJA 4Q1OA 1SP3A 1E39A 3TTBA 3S7WA 1FT5A 2ZO5A 3UBRA 3F29A 4Q4UA 3OWMA 3FO3A 1D4CA 1JRYA 1FT6A 1FS9A 1FS8A 1M1RA 1BVBA 1M1QA 2B7SA 2RF7A 1LJ1A 2RDZA 3BNFA 1QJDA 3D1IA 1QDBA 1M1PA 3LG1A 4L38A 3BNGA 2J7AA
chains in the Genus database with same CATH topology
3SCEA 1JNIA 3L1TA 1P2HA 1JRZA 1D4EA 1KSUA 4L3XA 2E81A 3GM6A 4Q17A 4Q0TA 1FS7A 3RKHA 1KSSA 3SXQA 1M64A 1QO8A 2VR0A 1GU6A 3LGQA 4Q5CA 3UU9A 4Q5BA 4WJYA 2K3VA 1OAHA 1Q9IA 4L3YA 2E80A 2OT4A 3MMOA 3BNHA 1Y0PA 4L3ZA 3TORA 1D4DA 1JRXA 1P2EA 2B7RA 3BNJA 4Q1OA 1SP3A 1E39A 3TTBA 3S7WA 1FT5A 2ZO5A 3UBRA 3F29A 4Q4UA 3OWMA 3FO3A 1D4CA 1JRYA 1FT6A 1FS9A 1FS8A 1M1RA 1BVBA 1M1QA 2B7SA 2RF7A 1LJ1A 2RDZA 3BNFA 1QJDA 3D1IA 1QDBA 1M1PA 3LG1A 4L38A 3BNGA 2J7AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SCE A;  1JNI A;  3L1T A;  1P2H A;  1JRZ A;  1D4E A;  1KSU A;  4L3X A;  2E81 A;  3GM6 A;  4Q17 A;  4Q0T A;  1FS7 A;  3RKH A;  1KSS A;  3SXQ A;  1M64 A;  1QO8 A;  2VR0 A;  1GU6 A;  3LGQ A;  4Q5C A;  3UU9 A;  4Q5B A;  4WJY A;  2K3V A;  1OAH A;  1Q9I A;  4L3Y A;  2E80 A;  2OT4 A;  3MMO A;  3BNH A;  1Y0P A;  4L3Z A;  3TOR A;  1D4D A;  1JRX A;  1P2E A;  2B7R A;  3BNJ A;  4Q1O A;  1SP3 A;  1E39 A;  3TTB A;  3S7W A;  1FT5 A;  2ZO5 A;  3UBR A;  3F29 A;  4Q4U A;  3OWM A;  3FO3 A;  1D4C A;  1JRY A;  1FT6 A;  1FS9 A;  1FS8 A;  1M1R A;  1BVB A;  1M1Q A;  2B7S A;  2RF7 A;  1LJ1 A;  2RDZ A;  3BNF A;  1QJD A;  3D1I A;  1QDB A;  1M1P A;  3LG1 A;  4L38 A;  3BNG A;  2J7A A; 
#chains in the Genus database with same CATH topology
 3SCE A;  1JNI A;  3L1T A;  1P2H A;  1JRZ A;  1D4E A;  2CZS A;  1KSU A;  4L3X A;  2E81 A;  3GM6 A;  4Q17 A;  4Q0T A;  1FS7 A;  3RKH A;  1KSS A;  3SXQ A;  1M64 A;  1QO8 A;  2VR0 A;  1GU6 A;  3LGQ A;  4Q5C A;  3UU9 A;  4Q5B A;  4WJY A;  2K3V A;  1OAH A;  1Q9I A;  4L3Y A;  2E80 A;  2OT4 A;  3MMO A;  3BNH A;  1Y0P A;  4L3Z A;  3TOR A;  1D4D A;  1JRX A;  1P2E A;  2B7R A;  3BNJ A;  4Q1O A;  1SP3 A;  1E39 A;  3TTB A;  3S7W A;  1FT5 A;  2ZO5 A;  3UBR A;  3F29 A;  4Q4U A;  3OWM A;  3FO3 A;  1D4C A;  1JRY A;  1FT6 A;  1FS9 A;  1FS8 A;  1M1R A;  1BVB A;  1M1Q A;  2B7S A;  2RF7 A;  1LJ1 A;  2RDZ A;  3BNF A;  1QJD A;  3D1I A;  1QDB A;  1M1P A;  3LG1 A;  4L38 A;  3BNG A;  2J7A A; 
#chains in the Genus database with same CATH homology
 3SCE A;  1JNI A;  3L1T A;  1P2H A;  1JRZ A;  1D4E A;  1KSU A;  4L3X A;  2E81 A;  3GM6 A;  4Q17 A;  4Q0T A;  1FS7 A;  3RKH A;  1KSS A;  3SXQ A;  1M64 A;  1QO8 A;  2VR0 A;  1GU6 A;  3LGQ A;  4Q5C A;  3UU9 A;  4Q5B A;  4WJY A;  2K3V A;  1OAH A;  1Q9I A;  4L3Y A;  2E80 A;  2OT4 A;  3MMO A;  3BNH A;  1Y0P A;  4L3Z A;  3TOR A;  1D4D A;  1JRX A;  1P2E A;  2B7R A;  3BNJ A;  4Q1O A;  1SP3 A;  1E39 A;  3TTB A;  3S7W A;  1FT5 A;  2ZO5 A;  3UBR A;  3F29 A;  4Q4U A;  3OWM A;  3FO3 A;  1D4C A;  1JRY A;  1FT6 A;  1FS9 A;  1FS8 A;  1M1R A;  1BVB A;  1M1Q A;  2B7S A;  2RF7 A;  1LJ1 A;  2RDZ A;  3BNF A;  1QJD A;  3D1I A;  1QDB A;  1M1P A;  3LG1 A;  4L38 A;  3BNG A;  2J7A A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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