1JYHA

Crystal structure of the escherichia coli sbmc protein (aka gyrase inhibitory protein gyri, aka yeeb)
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
155
structure length
155
Chain Sequence
MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the Escherichia coli SbmC protein that protects cells from the DNA replication inhibitor microcin B17.
pubmed doi rcsb
molecule tags Unknown function
source organism Escherichia coli
molecule keywords DNA Gyrase inhibitory protein
total genus 39
structure length 155
sequence length 155
ec nomenclature
pdb deposition date 2001-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14526 Cass2 Integron-associated effector binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.20.80.10 Alpha Beta Alpha-Beta Barrel Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A Regulatory factor, effector binding domain 1jyhA00
5KAWA 2KCUA 2GOVA 4A1MA 5GQQA 3R8JA 3Q5PA 3D70A 3D6YA 3Q3DA 3R8KA 3IAOA 1EXIA 1EXJA 4AYZB 5KAVA 3Q5SA 3Q1MA 3D71A 3Q5RA 4AYZA 3D6ZA 1D5YA 1R8EA 5KAXA 3LURA 2BOWA 1BOWA 3E0HA 1JYHA 3GK6A 5KATA 2HVAA 3B49A 3Q2YA 4B0YA 5KAUA 5KCBA
chains in the Genus database with same CATH superfamily
5KAWA 2KCUA 2GOVA 4A1MA 5GQQA 3R8JA 3Q5PA 3D70A 3D6YA 3Q3DA 3R8KA 3IAOA 1EXIA 1EXJA 4AYZB 5KAVA 3Q5SA 3Q1MA 3D71A 3Q5RA 4AYZA 3D6ZA 1D5YA 1R8EA 5KAXA 3LURA 2BOWA 1BOWA 3E0HA 1JYHA 3GK6A 5KATA 2HVAA 3B49A 3Q2YA 4B0YA 5KAUA 5KCBA
chains in the Genus database with same CATH topology
5KAWA 2KCUA 2GOVA 4A1MA 5GQQA 3R8JA 3Q5PA 3D70A 3D6YA 3Q3DA 3R8KA 3IAOA 1EXIA 1EXJA 4AYZB 5KAVA 3Q5SA 3Q1MA 3D71A 3Q5RA 4AYZA 3D6ZA 1D5YA 1R8EA 5KAXA 3LURA 2BOWA 1BOWA 3E0HA 1JYHA 3GK6A 5KATA 2HVAA 3B49A 3Q2YA 4B0YA 5KAUA 5KCBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5KAW A;  2KCU A;  2GOV A;  4A1M A;  5GQQ A;  3R8J A;  3Q5P A;  3D70 A;  3D6Y A;  3Q3D A;  3R8K A;  3IAO A;  1EXI A;  1EXJ A;  4AYZ B;  5KAV A;  3Q5S A;  3Q1M A;  3D71 A;  3Q5R A;  4AYZ A;  3D6Z A;  1D5Y A;  1R8E A;  5KAX A;  3LUR A;  2BOW A;  1BOW A;  3E0H A;  1JYH A;  3GK6 A;  5KAT A;  2HVA A;  3B49 A;  3Q2Y A;  4B0Y A;  5KAU A;  5KCB A; 
#chains in the Genus database with same CATH topology
 5KAW A;  2KCU A;  2GOV A;  4A1M A;  5GQQ A;  3R8J A;  3Q5P A;  3D70 A;  3D6Y A;  3Q3D A;  3R8K A;  3IAO A;  1EXI A;  1EXJ A;  4AYZ B;  5KAV A;  3Q5S A;  3Q1M A;  3D71 A;  3Q5R A;  4AYZ A;  3D6Z A;  1D5Y A;  1R8E A;  5KAX A;  3LUR A;  2BOW A;  1BOW A;  3E0H A;  1JYH A;  3GK6 A;  5KAT A;  2HVA A;  3B49 A;  3Q2Y A;  4B0Y A;  5KAU A;  5KCB A; 
#chains in the Genus database with same CATH homology
 5KAW A;  2KCU A;  2GOV A;  4A1M A;  5GQQ A;  3R8J A;  3Q5P A;  3D70 A;  3D6Y A;  3Q3D A;  3R8K A;  3IAO A;  1EXI A;  1EXJ A;  4AYZ B;  5KAV A;  3Q5S A;  3Q1M A;  3D71 A;  3Q5R A;  4AYZ A;  3D6Z A;  1D5Y A;  1R8E A;  5KAX A;  3LUR A;  2BOW A;  1BOW A;  3E0H A;  1JYH A;  3GK6 A;  5KAT A;  2HVA A;  3B49 A;  3Q2Y A;  4B0Y A;  5KAU A;  5KCB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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