1K6DA

Crystal structure of acetate coa-transferase alpha subunit
Total Genus 66

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
219
structure length
217
Chain Sequence
MKTKLMTLQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLESGVRDLTLIANDTAFVDTGIGPLIVNGRVRKVIASHIGTNPETGRRMISGEMDVVLVPQGTLIEQIRCGGAGLGGFLTPTGVGTVEGKQTLTLDGKTWLLERPLRADLALIRAHRCDTLGNLTYQLSARNFNPLIALAADITLVEPDELVETGELQPDHIVTPGAVIDHIIVSQES

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTVIII6 (203-206)3H3 (207-209)S1 (5-6)S12 (212-214)3H1 (12-14)TII1 (16-19)S3 (47-53)S2 (20-23)TII2 (28-31)TIV1 (25-28)TIV2 (168-171)TI'1 (26-29)TIV3 (170-173)AH2 (33-42)O1 (31-33)AH5 (100-112)TI2 (78-81)TI1 (56-59)AH3 (61-67)S4 (70-77)AH4 (82-90)S8 (139-144)S6 (117-119)TII3 (120-123)TII4 (122-125)S7 (132-136)TII'1 (136-139)S9 (149-160)3H2 (200-202)TI3 (160-163)S10 (165-166)TI4 (169-172)AH6 (174-179)S11 (182-193)TII5 (194-197)TIV4 (195-198)AH1 (8-11)TI5 (179-182)S5 (94-97)Updating...
connected with : NaN
molecule tags Transferase
source organism Escherichia coli
publication title Autotracing of Escherichia coli acetate CoA-transferase alpha-subunit structure using 3.4 A MAD and 1.9 A native data.
pubmed doi rcsb
molecule keywords ACETATE COA-TRANSFERASE ALPHA SUBUNIT
total genus 66
structure length 217
sequence length 219
chains with identical sequence B
ec nomenclature ec 2.8.3.8: Acetate CoA-transferase.
pdb deposition date 2001-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 1k6dA00
1O9LA 1POIB 1POIA 1K6DA 3GK7A 3K6MA 1XR4A 1OOZA 4KGBA 3RRLB 3RRLA 3DLXA 1OPEA 2AHVA 2AHUA 1M3EA 3QDQA 2HJ0A 1OOYA 3D3UA 2OASA 5DBNA 3OXOA 5DBNB 3CDKB 3CDKA 2AHWA 2NRBA 3EH7A 2NRCA
chains in the Genus database with same CATH superfamily
1O9LA 1POIB 1POIA 1K6DA 3GK7A 3K6MA 1XR4A 1OOZA 4KGBA 3RRLB 3RRLA 3DLXA 1OPEA 2AHVA 2AHUA 1M3EA 3QDQA 2HJ0A 1OOYA 3D3UA 2OASA 5DBNA 3OXOA 5DBNB 3CDKB 3CDKA 2AHWA 2NRBA 3EH7A 2NRCA
chains in the Genus database with same CATH topology
1O9LA 1POIB 1POIA 1K6DA 3GK7A 3K6MA 1XR4A 1OOZA 4KGBA 3RRLB 3RRLA 3DLXA 1OPEA 2AHVA 2AHUA 1M3EA 3QDQA 2HJ0A 1OOYA 3D3UA 2OASA 5DBNA 3OXOA 5DBNB 3CDKB 3CDKA 2AHWA 2NRBA 3EH7A 2NRCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O9L A;  1POI B;  1POI A;  1K6D A;  3GK7 A;  3K6M A;  1XR4 A;  1OOZ A;  4KGB A;  3RRL B;  3RRL A;  3DLX A;  1OPE A;  2AHV A;  2AHU A;  1M3E A;  3QDQ A;  2HJ0 A;  1OOY A;  3D3U A;  2OAS A;  5DBN A;  3OXO A;  5DBN B;  3CDK B;  3CDK A;  2AHW A;  2NRB A;  3EH7 A;  2NRC A; 
#chains in the Genus database with same CATH topology
 1O9L A;  1POI B;  1POI A;  1K6D A;  3GK7 A;  3K6M A;  1XR4 A;  1OOZ A;  4KGB A;  3RRL B;  3RRL A;  3DLX A;  1OPE A;  2AHV A;  2AHU A;  1M3E A;  3QDQ A;  2HJ0 A;  1OOY A;  3D3U A;  2OAS A;  5DBN A;  3OXO A;  5DBN B;  3CDK B;  3CDK A;  2AHW A;  2NRB A;  3EH7 A;  2NRC A; 
#chains in the Genus database with same CATH homology
 1O9L A;  1POI B;  1POI A;  1K6D A;  3GK7 A;  3K6M A;  1XR4 A;  1OOZ A;  4KGB A;  3RRL B;  3RRL A;  3DLX A;  1OPE A;  2AHV A;  2AHU A;  1M3E A;  3QDQ A;  2HJ0 A;  1OOY A;  3D3U A;  2OAS A;  5DBN A;  3OXO A;  5DBN B;  3CDK B;  3CDK A;  2AHW A;  2NRB A;  3EH7 A;  2NRC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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