1M3EA

Succinyl-coa:3-ketoacid coa transferase from pig heart (selenomethionine)
Total Genus 126
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
126
sequence length
481
structure length
472
Chain Sequence
TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIERLSVRKEEDDNVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords SUCCINYL-COA:3-KETOACID-COENZYME A TRANSFERASE
publication title Structure of the Mammalian CoA Transferase from Pig Heart
pubmed doi rcsb
source organism Sus scrofa
molecule tags Transferase
total genus 126
structure length 472
sequence length 481
chains with identical sequence B, C, D
ec nomenclature ec 2.8.3.5: 3-oxoacid CoA-transferase.
pdb deposition date 2002-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 1m3eA01
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 1m3eA02
3QDQA 3K6MA 2AHUA 1O9LA 1XR4A 1M3EA 3CDKB 1OPEA 1OOZA 2AHVA 2NRCA 3CDKA 2AHWA 4KGBA 1POIB 3GK7A 2HJ0A 1POIA 1K6DA 3OXOA 2OASA 1OOYA 5DBNB 3DLXA 3EH7A 5DBNA 2NRBA 3RRLB 3D3UA 3RRLA
chains in the Genus database with same CATH superfamily
3QDQA 3K6MA 2AHUA 1O9LA 1XR4A 1M3EA 3CDKB 1OPEA 1OOZA 2AHVA 2NRCA 3CDKA 2AHWA 4KGBA 1POIB 3GK7A 2HJ0A 1POIA 1K6DA 3OXOA 2OASA 1OOYA 5DBNB 3DLXA 3EH7A 5DBNA 2NRBA 3RRLB 3D3UA 3RRLA
chains in the Genus database with same CATH topology
3QDQA 3K6MA 2AHUA 1O9LA 1XR4A 1M3EA 3CDKB 1OPEA 1OOZA 2AHVA 2NRCA 3CDKA 2AHWA 4KGBA 1POIB 3GK7A 2HJ0A 1POIA 1K6DA 3OXOA 2OASA 1OOYA 5DBNB 3DLXA 3EH7A 5DBNA 2NRBA 3RRLB 3D3UA 3RRLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QDQ A;  3K6M A;  2AHU A;  1O9L A;  1XR4 A;  1M3E A;  3CDK B;  1OPE A;  1OOZ A;  2AHV A;  2NRC A;  3CDK A;  2AHW A;  4KGB A;  1POI B;  3GK7 A;  2HJ0 A;  1POI A;  1K6D A;  3OXO A;  2OAS A;  1OOY A;  5DBN B;  3DLX A;  3EH7 A;  5DBN A;  2NRB A;  3RRL B;  3D3U A;  3RRL A; 
#chains in the Genus database with same CATH topology
 3QDQ A;  3K6M A;  2AHU A;  1O9L A;  1XR4 A;  1M3E A;  3CDK B;  1OPE A;  1OOZ A;  2AHV A;  2NRC A;  3CDK A;  2AHW A;  4KGB A;  1POI B;  3GK7 A;  2HJ0 A;  1POI A;  1K6D A;  3OXO A;  2OAS A;  1OOY A;  5DBN B;  3DLX A;  3EH7 A;  5DBN A;  2NRB A;  3RRL B;  3D3U A;  3RRL A; 
#chains in the Genus database with same CATH homology
 3QDQ A;  3K6M A;  2AHU A;  1O9L A;  1XR4 A;  1M3E A;  3CDK B;  1OPE A;  1OOZ A;  2AHV A;  2NRC A;  3CDK A;  2AHW A;  4KGB A;  1POI B;  3GK7 A;  2HJ0 A;  1POI A;  1K6D A;  3OXO A;  2OAS A;  1OOY A;  5DBN B;  3DLX A;  3EH7 A;  5DBN A;  2NRB A;  3RRL B;  3D3U A;  3RRL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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