3QDQA

Complex between 4-hydroxybutyrate coa-transferase from clostridium aminobutyricum and coa
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
447
structure length
447
Chain Sequence
MDWKKIYEDRTCTADEAVKSIKSGDRVLFAHCVAEPPVLVEAMVANAAAYKNVTVSHMVTLGKGEYSKPEYKENFTFEGWFTSPSTRGSIAEGHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDHNGFCCVGVSSDYTMQAIKSAKIVLAEVNDQVPVVYGDTFVHVSEIDKFVETSHPLPEIGLPKIGEVEAAIGKHCASLIEDGSTLQLGIGAIPDAVLSQLKDKKHLGIHSEMISDGVVDLYEAGVIDCSQKSIDKGKMAITFLMGTKRLYDFAANNPKVELKPVDYINHPSVVAQCSKMVCINACLQVDFMGQIVSDSIGTKQFSGVGGQVDFVRGASMSIDGKGKAIIAMPSVAKKKDGSMISKIVPFIDHGAAVTTSRNDADYVVTEYGIAEMKGKSLQDRARALINIAHPDFKDELKAEFEKRFNAAFSAWSHPQFE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords 4-Hydroxybutyrate CoA-transferase
publication title Crystal structure of the complex between 4-hydroxybutyrate CoA-transferase from Clostridium aminobutyricum and CoA.
pubmed doi rcsb
source organism Clostridium aminobutyricum
total genus 148
structure length 447
sequence length 447
ec nomenclature ec 2.8.3.-:
pdb deposition date 2011-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02550 AcetylCoA_hydro Acetyl-CoA hydrolase/transferase N-terminal domain
A PF13336 AcetylCoA_hyd_C Acetyl-CoA hydrolase/transferase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.70 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA 4-hydroxybutyrate coenzyme like domains 3qdqA02
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3qdqA01
3.40.1080.20 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3qdqA03
3CDKA 3RRLB 1POIB 2NRCA 5DBNB 1OOYA 3CDKB 1OOZA 2HJ0A 2NRBA 1K6DA 1OPEA 1O9LA 4KGBA 2AHUA 2AHVA 2OASA 3DLXA 3D3UA 2AHWA 1XR4A 3OXOA 1M3EA 3K6MA 3QDQA 3RRLA 1POIA 3GK7A 5DBNA 3EH7A
chains in the Genus database with same CATH superfamily
1WXWA 1AUZA 5EUUA 3IH8A 3LKLA 4XS5A 3IHAA 4HIZA 2CWWA 5EUXA 1K6DA 1V0FA 2KA5A 2B78A 3D03A 4L1CA 2DXNA 2AHUA 3AGEA 3MGLA 3C0KA 3V97A 1FCFA 2DXLA 3K6MA 2RRLA 1POIA 3GK7A 1N6DA 3RRLB 5EUWA 1HF2A 2NRCA 3IF5A 5DBNB 1OOYA 3LDFA 3CDKB 4DMGA 3V8VA 1OPEA 1O9LA 1THNB 1J7XA 3DLXA 5EUZA 1TILB 3D3UA 3GVLA 3OXOA 1N6FA 3AGDA 3GVJA 4AE2A 1WXXA 1H4YA 3GVKA 3OIRA 2KLNA 3NY7A 1V0EA 1T6RA 2HJ0A 1FC6A 1FC7A 5EZBA 4KGBA 2AHVA 2OASA 2AS0A 3VSEA 3DORA 3GHFA 1XR4A 1H4ZA 3IH9A 4QTPA 1SBOA 4DGFA 1TH8B 1K32A 1FC9A 2ZOAA 1VC1A 2ZO9B 3K50A 1TIDB 4HYLA 3QDQA 3IHBA 3RRLA 1BUZA 4GHNA 5DBNA 3CDKA 3T6OA 2VY9A 3ZXNA 1POIB 3F43A 1H4XA 1OOZA 3OIZA 2NRBA 4L8KA 5EUSA 3DJAA 3MOGA 3DUPA 3LLOA 2AHWA 1N6EA 1BPLA 3GMFA 4AEJA 1M3EA 4DGHA 3ZTBA 3JU4A 4JC0A 3EH7A
chains in the Genus database with same CATH topology
3CDKA 3RRLB 1POIB 2NRCA 5DBNB 1OOYA 3CDKB 1OOZA 2HJ0A 2NRBA 1K6DA 1OPEA 1O9LA 4KGBA 2AHUA 2AHVA 2OASA 3DLXA 3D3UA 2AHWA 1XR4A 3OXOA 1M3EA 3K6MA 3QDQA 3RRLA 1POIA 3GK7A 5DBNA 3EH7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CDK A;  3RRL B;  1POI B;  2NRC A;  5DBN B;  1OOY A;  3CDK B;  1OOZ A;  2HJ0 A;  2NRB A;  1K6D A;  1OPE A;  1O9L A;  4KGB A;  2AHU A;  2AHV A;  2OAS A;  3DLX A;  3D3U A;  2AHW A;  1XR4 A;  3OXO A;  1M3E A;  3K6M A;  3QDQ A;  3RRL A;  1POI A;  3GK7 A;  5DBN A;  3EH7 A; 
#chains in the Genus database with same CATH topology
 1WXW A;  1AUZ A;  5EUU A;  3IH8 A;  3LKL A;  4XS5 A;  3IHA A;  4HIZ A;  2CWW A;  5EUX A;  1K6D A;  1V0F A;  2KA5 A;  2B78 A;  3D03 A;  4L1C A;  2DXN A;  2AHU A;  3AGE A;  3MGL A;  3C0K A;  3V97 A;  1FCF A;  2DXL A;  3K6M A;  2RRL A;  1POI A;  3GK7 A;  1N6D A;  3RRL B;  5EUW A;  1HF2 A;  2NRC A;  3IF5 A;  5DBN B;  1OOY A;  3LDF A;  3CDK B;  4DMG A;  3V8V A;  1OPE A;  1O9L A;  1THN B;  1J7X A;  3DLX A;  5EUZ A;  1TIL B;  3D3U A;  3GVL A;  3OXO A;  1N6F A;  3AGD A;  3GVJ A;  4AE2 A;  1WXX A;  1H4Y A;  3GVK A;  3OIR A;  2KLN A;  3NY7 A;  1V0E A;  1T6R A;  2HJ0 A;  1FC6 A;  1FC7 A;  5EZB A;  4KGB A;  2AHV A;  2OAS A;  2AS0 A;  3VSE A;  3DOR A;  3GHF A;  1XR4 A;  1H4Z A;  3IH9 A;  4QTP A;  1SBO A;  4DGF A;  1TH8 B;  1K32 A;  1FC9 A;  2ZOA A;  1VC1 A;  2ZO9 B;  3K50 A;  1TID B;  4HYL A;  3QDQ A;  3IHB A;  3RRL A;  1BUZ A;  4GHN A;  5DBN A;  3CDK A;  3T6O A;  2VY9 A;  3ZXN A;  1POI B;  3F43 A;  1H4X A;  1OOZ A;  3OIZ A;  2NRB A;  4L8K A;  5EUS A;  3DJA A;  3MOG A;  3DUP A;  3LLO A;  2AHW A;  1N6E A;  1BPL A;  3GMF A;  4AEJ A;  1M3E A;  4DGH A;  3ZTB A;  3JU4 A;  4JC0 A;  3EH7 A; 
#chains in the Genus database with same CATH homology
 3CDK A;  3RRL B;  1POI B;  2NRC A;  5DBN B;  1OOY A;  3CDK B;  1OOZ A;  2HJ0 A;  2NRB A;  1K6D A;  1OPE A;  1O9L A;  4KGB A;  2AHU A;  2AHV A;  2OAS A;  3DLX A;  3D3U A;  2AHW A;  1XR4 A;  3OXO A;  1M3E A;  3K6M A;  3QDQ A;  3RRL A;  1POI A;  3GK7 A;  5DBN A;  3EH7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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