3D3UA

Crystal structure of 4-hydroxybutyrate coa-transferase (abft-2) from porphyromonas gingivalis. northeast structural genomics consortium target pgr26
Total Genus 117
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
117
sequence length
429
structure length
387
Chain Sequence
b'QWQELYRQRVCSADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQREKLENITVFHMLYFGDAPHLAPEMRSHVHPTLCHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSFGVSCDYTKAAAECAPVVVAEVNKQMPFIGGENLIHISKLTHIIEVDEPIAEVLPGSDLELRIGQNCASLIKDGDTLQLGIGGIPDAVLRALEGHKDLGIHTEMFTDGVMRMIRKGIINGKKKTLHPEKVVTSLIFGSKELYDFVNNNPVIECYPVDYINNPDVIGKNDRMVSINSCLEMDLMGQAGQVDFLRGAKRSKGGISIMAFPSTAKKGTESRIVPILKTGRNEVDYVVTEYGVARLRGATLRQRAEALTAIAHPDFRPALEEEIRRRF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 4-hydroxybutyrate CoA-transferase
publication title Crystal structure of 4-hydroxybutyrate CoA-transferase (abfT-2) from Porphyromonas gingivalis.
rcsb
source organism Porphyromonas gingivalis
molecule tags Transferase
total genus 117
structure length 387
sequence length 429
ec nomenclature
pdb deposition date 2008-05-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02550 AcetylCoA_hydro Acetyl-CoA hydrolase/transferase N-terminal domain
A PF13336 AcetylCoA_hyd_C Acetyl-CoA hydrolase/transferase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.70 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA 4-hydroxybutyrate coenzyme like domains 3d3uA02
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3d3uA01
3.40.1080.20 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3d3uA03
5DBNB 3K6MA 5DBNA 2AHVA 1K6DA 1POIB 1POIA 3CDKA 3CDKB 1XR4A 2AHUA 1OPEA 3GK7A 2NRBA 3D3UA 3DLXA 3EH7A 1M3EA 2NRCA 3OXOA 1OOZA 1OOYA 1O9LA 2HJ0A 4KGBA 3RRLB 3RRLA 2AHWA 3QDQA 2OASA
chains in the Genus database with same CATH superfamily
2RRLA 1TH8B 5EUXA 3DJAA 1POIB 4AE2A 2B78A 1V0FA 1XR4A 1BUZA 4JC0A 3D03A 1TIDB 1N6DA 4L8KA 2DXNA 2NRBA 3D3UA 3C0KA 3LKLA 3EH7A 5EUWA 3IF5A 5EUUA 1WXXA 3OXOA 3IH8A 3NY7A 5EZBA 3AGEA 4DMGA 3LDFA 2AHWA 3GHFA 3GVLA 3V8VA 3JU4A 3K6MA 1THNB 1K6DA 3CDKA 1K32A 2AHUA 3DUPA 3DORA 3ZXNA 3GK7A 1H4YA 3T6OA 1SBOA 3IHAA 1N6EA 1H4ZA 1O9LA 2HJ0A 1N6FA 1BPLA 3RRLB 2KA5A 4L1CA 2OASA 3MOGA 3V97A 5DBNA 5EUSA 1FC6A 1POIA 1WXWA 3IHBA 2CWWA 3MGLA 1T6RA 2VY9A 1TILB 3GVKA 4DGHA 1FC7A 3DLXA 3GMFA 4XS5A 3OIRA 1H4XA 2NRCA 3AGDA 5EUZA 4HIZA 4AEJA 2ZOAA 1VC1A 4KGBA 3VSEA 1V0EA 2ZO9B 1OOYA 1FC9A 1HF2A 3GVJA 5DBNB 3ZTBA 2AHVA 4HYLA 3CDKB 3OIZA 3K50A 2KLNA 2AS0A 1OPEA 1FCFA 1AUZA 4DGFA 1J7XA 3LLOA 3IH9A 1M3EA 2DXLA 1OOZA 4GHNA 3F43A 3RRLA 4QTPA 3QDQA
chains in the Genus database with same CATH topology
5DBNB 3K6MA 5DBNA 2AHVA 1K6DA 1POIB 1POIA 3CDKA 3CDKB 1XR4A 2AHUA 1OPEA 3GK7A 2NRBA 3D3UA 3DLXA 3EH7A 1M3EA 2NRCA 3OXOA 1OOZA 1OOYA 1O9LA 2HJ0A 4KGBA 3RRLB 3RRLA 2AHWA 3QDQA 2OASA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DBN B;  3K6M A;  5DBN A;  2AHV A;  1K6D A;  1POI B;  1POI A;  3CDK A;  3CDK B;  1XR4 A;  2AHU A;  1OPE A;  3GK7 A;  2NRB A;  3D3U A;  3DLX A;  3EH7 A;  1M3E A;  2NRC A;  3OXO A;  1OOZ A;  1OOY A;  1O9L A;  2HJ0 A;  4KGB A;  3RRL B;  3RRL A;  2AHW A;  3QDQ A;  2OAS A; 
#chains in the Genus database with same CATH topology
 2RRL A;  1TH8 B;  5EUX A;  3DJA A;  1POI B;  4AE2 A;  2B78 A;  1V0F A;  1XR4 A;  1BUZ A;  4JC0 A;  3D03 A;  1TID B;  1N6D A;  4L8K A;  2DXN A;  2NRB A;  3D3U A;  3C0K A;  3LKL A;  3EH7 A;  5EUW A;  3IF5 A;  5EUU A;  1WXX A;  3OXO A;  3IH8 A;  3NY7 A;  5EZB A;  3AGE A;  4DMG A;  3LDF A;  2AHW A;  3GHF A;  3GVL A;  3V8V A;  3JU4 A;  3K6M A;  1THN B;  1K6D A;  3CDK A;  1K32 A;  2AHU A;  3DUP A;  3DOR A;  3ZXN A;  3GK7 A;  1H4Y A;  3T6O A;  1SBO A;  3IHA A;  1N6E A;  1H4Z A;  1O9L A;  2HJ0 A;  1N6F A;  1BPL A;  3RRL B;  2KA5 A;  4L1C A;  2OAS A;  3MOG A;  3V97 A;  5DBN A;  5EUS A;  1FC6 A;  1POI A;  1WXW A;  3IHB A;  2CWW A;  3MGL A;  1T6R A;  2VY9 A;  1TIL B;  3GVK A;  4DGH A;  1FC7 A;  3DLX A;  3GMF A;  4XS5 A;  3OIR A;  1H4X A;  2NRC A;  3AGD A;  5EUZ A;  4HIZ A;  4AEJ A;  2ZOA A;  1VC1 A;  4KGB A;  3VSE A;  1V0E A;  2ZO9 B;  1OOY A;  1FC9 A;  1HF2 A;  3GVJ A;  5DBN B;  3ZTB A;  2AHV A;  4HYL A;  3CDK B;  3OIZ A;  3K50 A;  2KLN A;  2AS0 A;  1OPE A;  1FCF A;  1AUZ A;  4DGF A;  1J7X A;  3LLO A;  3IH9 A;  1M3E A;  2DXL A;  1OOZ A;  4GHN A;  3F43 A;  3RRL A;  4QTP A;  3QDQ A; 
#chains in the Genus database with same CATH homology
 5DBN B;  3K6M A;  5DBN A;  2AHV A;  1K6D A;  1POI B;  1POI A;  3CDK A;  3CDK B;  1XR4 A;  2AHU A;  1OPE A;  3GK7 A;  2NRB A;  3D3U A;  3DLX A;  3EH7 A;  1M3E A;  2NRC A;  3OXO A;  1OOZ A;  1OOY A;  1O9L A;  2HJ0 A;  4KGB A;  3RRL B;  3RRL A;  2AHW A;  3QDQ A;  2OAS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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