3D3UA

Crystal structure of 4-hydroxybutyrate coa-transferase (abft-2) from porphyromonas gingivalis. northeast structural genomics consortium target pgr26
Total Genus 117
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
117
sequence length
429
structure length
387
Chain Sequence
QWQELYRQRVCSADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQREKLENITVFHMLYFGDAPHLAPEMRSHVHPTLCHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSFGVSCDYTKAAAECAPVVVAEVNKQMPFIGGENLIHISKLTHIIEVDEPIAEVLPGSDLELRIGQNCASLIKDGDTLQLGIGGIPDAVLRALEGHKDLGIHTEMFTDGVMRMIRKGIINGKKKTLHPEKVVTSLIFGSKELYDFVNNNPVIECYPVDYINNPDVIGKNDRMVSINSCLEMDLMGQAGQVDFLRGAKRSKGGISIMAFPSTAKKGTESRIVPILKTGRNEVDYVVTEYGVARLRGATLRQRAEALTAIAHPDFRPALEEEIRRRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords 4-hydroxybutyrate CoA-transferase
publication title Crystal structure of 4-hydroxybutyrate CoA-transferase (abfT-2) from Porphyromonas gingivalis.
rcsb
source organism Porphyromonas gingivalis
total genus 117
structure length 387
sequence length 429
ec nomenclature
pdb deposition date 2008-05-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02550 AcetylCoA_hydro Acetyl-CoA hydrolase/transferase N-terminal domain
A PF13336 AcetylCoA_hyd_C Acetyl-CoA hydrolase/transferase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.70 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA 4-hydroxybutyrate coenzyme like domains 3d3uA02
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3d3uA01
3.40.1080.20 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3d3uA03
3GK7A 1OPEA 5DBNA 3D3UA 3QDQA 1OOZA 3K6MA 3RRLA 3CDKA 1OOYA 5DBNB 1O9LA 4KGBA 3RRLB 3CDKB 2NRCA 2OASA 3DLXA 1POIA 1M3EA 2NRBA 2AHVA 2HJ0A 2AHUA 1K6DA 3OXOA 1POIB 3EH7A 1XR4A 2AHWA
chains in the Genus database with same CATH superfamily
3LKLA 1J7XA 2DXNA 1FC7A 2KLNA 2ZOAA 3AGEA 3V8VA 2RRLA 5EUUA 2B78A 1TIDB 1HF2A 3MGLA 5EZBA 2CWWA 1VC1A 2OASA 3DLXA 3DUPA 3GVLA 1K32A 3OXOA 2AS0A 3IH8A 2ZO9B 3AGDA 1BPLA 1V0FA 3GVKA 3IHBA 3GK7A 4DMGA 3V97A 5DBNA 4HYLA 1V0EA 1OOZA 5EUZA 5DBNB 1O9LA 1T6RA 3ZTBA 2DXLA 1FC9A 1WXXA 2NRCA 4L8KA 3F43A 2AHVA 2HJ0A 2AHUA 1SBOA 3GMFA 2KA5A 3EH7A 4QTPA 1H4XA 3LDFA 5EUXA 1AUZA 3VSEA 1TILB 1THNB 1H4YA 3OIZA 3ZXNA 3QDQA 3K6MA 4DGFA 5EUWA 3CDKA 1OOYA 4DGHA 2VY9A 4KGBA 3MOGA 3LLOA 3CDKB 3DJAA 1TH8B 3JU4A 1POIA 3C0KA 1POIB 3GVJA 3IHAA 3IH9A 4HIZA 4L1CA 1XR4A 3GHFA 2AHWA 5EUSA 3OIRA 1OPEA 1FC6A 1WXWA 1N6EA 1BUZA 3IF5A 3D3UA 3RRLA 4AEJA 4AE2A 3D03A 1N6FA 3NY7A 3RRLB 1N6DA 3DORA 4XS5A 1H4ZA 1M3EA 2NRBA 1FCFA 1K6DA 3K50A 4GHNA 3T6OA 4JC0A
chains in the Genus database with same CATH topology
3GK7A 1OPEA 5DBNA 3D3UA 3QDQA 1OOZA 3K6MA 3RRLA 3CDKA 1OOYA 5DBNB 1O9LA 4KGBA 3RRLB 3CDKB 2NRCA 2OASA 3DLXA 1POIA 1M3EA 2NRBA 2AHVA 2HJ0A 2AHUA 1K6DA 3OXOA 1POIB 3EH7A 1XR4A 2AHWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GK7 A;  1OPE A;  5DBN A;  3D3U A;  3QDQ A;  1OOZ A;  3K6M A;  3RRL A;  3CDK A;  1OOY A;  5DBN B;  1O9L A;  4KGB A;  3RRL B;  3CDK B;  2NRC A;  2OAS A;  3DLX A;  1POI A;  1M3E A;  2NRB A;  2AHV A;  2HJ0 A;  2AHU A;  1K6D A;  3OXO A;  1POI B;  3EH7 A;  1XR4 A;  2AHW A; 
#chains in the Genus database with same CATH topology
 3LKL A;  1J7X A;  2DXN A;  1FC7 A;  2KLN A;  2ZOA A;  3AGE A;  3V8V A;  2RRL A;  5EUU A;  2B78 A;  1TID B;  1HF2 A;  3MGL A;  5EZB A;  2CWW A;  1VC1 A;  2OAS A;  3DLX A;  3DUP A;  3GVL A;  1K32 A;  3OXO A;  2AS0 A;  3IH8 A;  2ZO9 B;  3AGD A;  1BPL A;  1V0F A;  3GVK A;  3IHB A;  3GK7 A;  4DMG A;  3V97 A;  5DBN A;  4HYL A;  1V0E A;  1OOZ A;  5EUZ A;  5DBN B;  1O9L A;  1T6R A;  3ZTB A;  2DXL A;  1FC9 A;  1WXX A;  2NRC A;  4L8K A;  3F43 A;  2AHV A;  2HJ0 A;  2AHU A;  1SBO A;  3GMF A;  2KA5 A;  3EH7 A;  4QTP A;  1H4X A;  3LDF A;  5EUX A;  1AUZ A;  3VSE A;  1TIL B;  1THN B;  1H4Y A;  3OIZ A;  3ZXN A;  3QDQ A;  3K6M A;  4DGF A;  5EUW A;  3CDK A;  1OOY A;  4DGH A;  2VY9 A;  4KGB A;  3MOG A;  3LLO A;  3CDK B;  3DJA A;  1TH8 B;  3JU4 A;  1POI A;  3C0K A;  1POI B;  3GVJ A;  3IHA A;  3IH9 A;  4HIZ A;  4L1C A;  1XR4 A;  3GHF A;  2AHW A;  5EUS A;  3OIR A;  1OPE A;  1FC6 A;  1WXW A;  1N6E A;  1BUZ A;  3IF5 A;  3D3U A;  3RRL A;  4AEJ A;  4AE2 A;  3D03 A;  1N6F A;  3NY7 A;  3RRL B;  1N6D A;  3DOR A;  4XS5 A;  1H4Z A;  1M3E A;  2NRB A;  1FCF A;  1K6D A;  3K50 A;  4GHN A;  3T6O A;  4JC0 A; 
#chains in the Genus database with same CATH homology
 3GK7 A;  1OPE A;  5DBN A;  3D3U A;  3QDQ A;  1OOZ A;  3K6M A;  3RRL A;  3CDK A;  1OOY A;  5DBN B;  1O9L A;  4KGB A;  3RRL B;  3CDK B;  2NRC A;  2OAS A;  3DLX A;  1POI A;  1M3E A;  2NRB A;  2AHV A;  2HJ0 A;  2AHU A;  1K6D A;  3OXO A;  1POI B;  3EH7 A;  1XR4 A;  2AHW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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