3D3UA

Crystal structure of 4-hydroxybutyrate coa-transferase (abft-2) from porphyromonas gingivalis. northeast structural genomics consortium target pgr26
Total Genus 117
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
117
sequence length
429
structure length
387
Chain Sequence
QWQELYRQRVCSADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQREKLENITVFHMLYFGDAPHLAPEMRSHVHPTLCHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSFGVSCDYTKAAAECAPVVVAEVNKQMPFIGGENLIHISKLTHIIEVDEPIAEVLPGSDLELRIGQNCASLIKDGDTLQLGIGGIPDAVLRALEGHKDLGIHTEMFTDGVMRMIRKGIINGKKKTLHPEKVVTSLIFGSKELYDFVNNNPVIECYPVDYINNPDVIGKNDRMVSINSCLEMDLMGQAGQVDFLRGAKRSKGGISIMAFPSTAKKGTESRIVPILKTGRNEVDYVVTEYGVARLRGATLRQRAEALTAIAHPDFRPALEEEIRRRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 4-hydroxybutyrate CoA-transferase
publication title Crystal structure of 4-hydroxybutyrate CoA-transferase (abfT-2) from Porphyromonas gingivalis.
rcsb
source organism Porphyromonas gingivalis
molecule tags Transferase
total genus 117
structure length 387
sequence length 429
ec nomenclature
pdb deposition date 2008-05-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02550 AcetylCoA_hydro Acetyl-CoA hydrolase/transferase N-terminal domain
A PF13336 AcetylCoA_hyd_C Acetyl-CoA hydrolase/transferase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.70 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA 4-hydroxybutyrate coenzyme like domains 3d3uA02
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3d3uA01
3.40.1080.20 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3d3uA03
2AHVA 3GK7A 3CDKA 5DBNA 2OASA 3OXOA 1XR4A 1O9LA 1OPEA 2NRCA 1POIB 3RRLA 3DLXA 1K6DA 2AHWA 5DBNB 3CDKB 1OOYA 3D3UA 3QDQA 1OOZA 2NRBA 3RRLB 2HJ0A 3EH7A 2AHUA 1M3EA 3K6MA 4KGBA 1POIA
chains in the Genus database with same CATH superfamily
3D03A 3LKLA 3OIZA 2DXLA 4QTPA 1BUZA 1TILB 2NRCA 1FCFA 1FC6A 3GVJA 3JU4A 1WXXA 1K6DA 2AHWA 4HYLA 1N6DA 3QDQA 4DGFA 3IHBA 1J7XA 5EUUA 3EH7A 2AHUA 1M3EA 3K6MA 4KGBA 1FC9A 4L1CA 3OIRA 4AE2A 3ZTBA 1XR4A 3LLOA 1POIB 2KA5A 1H4ZA 5DBNB 1VC1A 2KLNA 3V97A 1V0FA 2VY9A 1BPLA 3DJAA 3GVLA 2HJ0A 3F43A 3GVKA 3ZXNA 3IHAA 4DMGA 2B78A 4XS5A 1FC7A 1POIA 2AHVA 5EZBA 3AGDA 3GK7A 1WXWA 1N6FA 1HF2A 5DBNA 5EUZA 3OXOA 4DGHA 2ZO9B 3DLXA 1SBOA 1THNB 2ZOAA 3VSEA 1TH8B 3DUPA 1OOYA 2NRBA 4HIZA 4JC0A 3MOGA 3IH8A 1TIDB 1N6EA 1AUZA 2DXNA 3AGEA 3NY7A 3IF5A 4AEJA 3CDKA 1H4XA 2OASA 1V0EA 1O9LA 1OPEA 1T6RA 3C0KA 5EUWA 3RRLA 3IH9A 3MGLA 3T6OA 4GHNA 3CDKB 3GMFA 2CWWA 5EUSA 3K50A 3D3UA 1OOZA 4L8KA 3RRLB 3V8VA 2AS0A 1K32A 3LDFA 2RRLA 3DORA 3GHFA 5EUXA 1H4YA
chains in the Genus database with same CATH topology
2AHVA 3GK7A 3CDKA 5DBNA 2OASA 3OXOA 1XR4A 1O9LA 1OPEA 2NRCA 1POIB 3RRLA 3DLXA 1K6DA 2AHWA 5DBNB 3CDKB 1OOYA 3D3UA 3QDQA 1OOZA 2NRBA 3RRLB 2HJ0A 3EH7A 2AHUA 1M3EA 3K6MA 4KGBA 1POIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AHV A;  3GK7 A;  3CDK A;  5DBN A;  2OAS A;  3OXO A;  1XR4 A;  1O9L A;  1OPE A;  2NRC A;  1POI B;  3RRL A;  3DLX A;  1K6D A;  2AHW A;  5DBN B;  3CDK B;  1OOY A;  3D3U A;  3QDQ A;  1OOZ A;  2NRB A;  3RRL B;  2HJ0 A;  3EH7 A;  2AHU A;  1M3E A;  3K6M A;  4KGB A;  1POI A; 
#chains in the Genus database with same CATH topology
 3D03 A;  3LKL A;  3OIZ A;  2DXL A;  4QTP A;  1BUZ A;  1TIL B;  2NRC A;  1FCF A;  1FC6 A;  3GVJ A;  3JU4 A;  1WXX A;  1K6D A;  2AHW A;  4HYL A;  1N6D A;  3QDQ A;  4DGF A;  3IHB A;  1J7X A;  5EUU A;  3EH7 A;  2AHU A;  1M3E A;  3K6M A;  4KGB A;  1FC9 A;  4L1C A;  3OIR A;  4AE2 A;  3ZTB A;  1XR4 A;  3LLO A;  1POI B;  2KA5 A;  1H4Z A;  5DBN B;  1VC1 A;  2KLN A;  3V97 A;  1V0F A;  2VY9 A;  1BPL A;  3DJA A;  3GVL A;  2HJ0 A;  3F43 A;  3GVK A;  3ZXN A;  3IHA A;  4DMG A;  2B78 A;  4XS5 A;  1FC7 A;  1POI A;  2AHV A;  5EZB A;  3AGD A;  3GK7 A;  1WXW A;  1N6F A;  1HF2 A;  5DBN A;  5EUZ A;  3OXO A;  4DGH A;  2ZO9 B;  3DLX A;  1SBO A;  1THN B;  2ZOA A;  3VSE A;  1TH8 B;  3DUP A;  1OOY A;  2NRB A;  4HIZ A;  4JC0 A;  3MOG A;  3IH8 A;  1TID B;  1N6E A;  1AUZ A;  2DXN A;  3AGE A;  3NY7 A;  3IF5 A;  4AEJ A;  3CDK A;  1H4X A;  2OAS A;  1V0E A;  1O9L A;  1OPE A;  1T6R A;  3C0K A;  5EUW A;  3RRL A;  3IH9 A;  3MGL A;  3T6O A;  4GHN A;  3CDK B;  3GMF A;  2CWW A;  5EUS A;  3K50 A;  3D3U A;  1OOZ A;  4L8K A;  3RRL B;  3V8V A;  2AS0 A;  1K32 A;  3LDF A;  2RRL A;  3DOR A;  3GHF A;  5EUX A;  1H4Y A; 
#chains in the Genus database with same CATH homology
 2AHV A;  3GK7 A;  3CDK A;  5DBN A;  2OAS A;  3OXO A;  1XR4 A;  1O9L A;  1OPE A;  2NRC A;  1POI B;  3RRL A;  3DLX A;  1K6D A;  2AHW A;  5DBN B;  3CDK B;  1OOY A;  3D3U A;  3QDQ A;  1OOZ A;  2NRB A;  3RRL B;  2HJ0 A;  3EH7 A;  2AHU A;  1M3E A;  3K6M A;  4KGB A;  1POI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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