3GK7A

Crystal structure of 4-hydroxybutyrate coa-transferase from clostridium aminobutyricum
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
447
structure length
447
Chain Sequence
MDWKKIYEDRTCTADEAVKSIKSGDRVLFAHCVAEPPVLVEAMVANAAAYKNVTVSHMVTLGKGEYSKPEYKENFTFEGWFTSPSTRGSIAEGHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDHNGFCCVGVSSDYTMQAIKSAKIVLAEVNDQVPVVYGDTFVHVSEIDKFVETSHPLPEIGLPKIGEVEAAIGKHCASLIEDGSTLQLGIGAIPDAVLSQLKDKKHLGIHSEMISDGVVDLYEAGVIDCSQKSIDKGKMAITFLMGTKRLYDFAANNPKVELKPVDYINHPSVVAQCSKMVCINACLQVDFMGQIVSDSIGTKQFSGVGGQVDFVRGASMSIDGKGKAIIAMPSVAKKKDGSMISKIVPFIDHGAAVTTSRNDADYVVTEYGIAEMKGKSLQDRARALINIAHPDFKDELKAEFEKRFNAAFSAWSHPQFE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords 4-Hydroxybutyrate CoA-transferase
publication title Crystal structure of 4-hydroxybutyrate CoA-transferase from Clostridium aminobutyricum
pubmed doi rcsb
source organism Clostridium aminobutyricum
total genus 160
structure length 447
sequence length 447
chains with identical sequence B
ec nomenclature ec 2.8.3.-:
pdb deposition date 2009-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02550 AcetylCoA_hydro Acetyl-CoA hydrolase/transferase N-terminal domain
A PF13336 AcetylCoA_hyd_C Acetyl-CoA hydrolase/transferase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.70 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA 4-hydroxybutyrate coenzyme like domains 3gk7A02
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3gk7A01
3.40.1080.20 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3gk7A03
1POIB 1OPEA 1K6DA 1M3EA 3CDKB 3QDQA 2NRCA 2AHUA 1POIA 1OOYA 5DBNB 3CDKA 2AHVA 3RRLB 3D3UA 3GK7A 5DBNA 3K6MA 2NRBA 3DLXA 3EH7A 3RRLA 1OOZA 2OASA 2HJ0A 3OXOA 1XR4A 4KGBA 1O9LA 2AHWA
chains in the Genus database with same CATH superfamily
1K6DA 3VSEA 1AUZA 5DBNB 4QTPA 3CDKA 2DXLA 1VC1A 3GK7A 2ZO9B 5EUWA 1H4ZA 4DGHA 4HYLA 3EH7A 1TILB 1BPLA 3IH9A 1WXWA 1TIDB 3NY7A 3MGLA 2B78A 3IHAA 1OPEA 1N6FA 1K32A 3CDKB 3GMFA 1H4XA 1V0FA 5EZBA 2AHVA 5EUXA 1WXXA 1FC7A 3C0KA 2ZOAA 3RRLA 1OOZA 3DORA 2CWWA 2OASA 3OXOA 3D03A 3DJAA 4JC0A 1HF2A 3ZTBA 1BUZA 3OIZA 1O9LA 1H4YA 1N6EA 3LLOA 2RRLA 3JU4A 3QDQA 5EUSA 2NRCA 1V0EA 2AHUA 1POIA 3IH8A 4XS5A 1OOYA 3GVKA 3LDFA 2VY9A 1FCFA 1THNB 3GVJA 3RRLB 3D3UA 3F43A 5DBNA 3K6MA 2NRBA 1N6DA 2DXNA 1J7XA 3DLXA 5EUUA 3GHFA 1SBOA 2HJ0A 3OIRA 2AHWA 2KLNA 4HIZA 4GHNA 4L1CA 1POIB 3DUPA 1M3EA 3V8VA 3K50A 2AS0A 3IF5A 3ZXNA 4DGFA 4DMGA 3AGDA 1TH8B 3GVLA 4AE2A 3V97A 1FC9A 4AEJA 1FC6A 3MOGA 5EUZA 2KA5A 4L8KA 3AGEA 3T6OA 1T6RA 1XR4A 3IHBA 3LKLA 4KGBA
chains in the Genus database with same CATH topology
1POIB 1OPEA 1K6DA 1M3EA 3CDKB 3QDQA 2NRCA 2AHUA 1POIA 1OOYA 5DBNB 3CDKA 2AHVA 3RRLB 3D3UA 3GK7A 5DBNA 3K6MA 2NRBA 3DLXA 3EH7A 3RRLA 1OOZA 2OASA 2HJ0A 3OXOA 1XR4A 4KGBA 1O9LA 2AHWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1POI B;  1OPE A;  1K6D A;  1M3E A;  3CDK B;  3QDQ A;  2NRC A;  2AHU A;  1POI A;  1OOY A;  5DBN B;  3CDK A;  2AHV A;  3RRL B;  3D3U A;  3GK7 A;  5DBN A;  3K6M A;  2NRB A;  3DLX A;  3EH7 A;  3RRL A;  1OOZ A;  2OAS A;  2HJ0 A;  3OXO A;  1XR4 A;  4KGB A;  1O9L A;  2AHW A; 
#chains in the Genus database with same CATH topology
 1K6D A;  3VSE A;  1AUZ A;  5DBN B;  4QTP A;  3CDK A;  2DXL A;  1VC1 A;  3GK7 A;  2ZO9 B;  5EUW A;  1H4Z A;  4DGH A;  4HYL A;  3EH7 A;  1TIL B;  1BPL A;  3IH9 A;  1WXW A;  1TID B;  3NY7 A;  3MGL A;  2B78 A;  3IHA A;  1OPE A;  1N6F A;  1K32 A;  3CDK B;  3GMF A;  1H4X A;  1V0F A;  5EZB A;  2AHV A;  5EUX A;  1WXX A;  1FC7 A;  3C0K A;  2ZOA A;  3RRL A;  1OOZ A;  3DOR A;  2CWW A;  2OAS A;  3OXO A;  3D03 A;  3DJA A;  4JC0 A;  1HF2 A;  3ZTB A;  1BUZ A;  3OIZ A;  1O9L A;  1H4Y A;  1N6E A;  3LLO A;  2RRL A;  3JU4 A;  3QDQ A;  5EUS A;  2NRC A;  1V0E A;  2AHU A;  1POI A;  3IH8 A;  4XS5 A;  1OOY A;  3GVK A;  3LDF A;  2VY9 A;  1FCF A;  1THN B;  3GVJ A;  3RRL B;  3D3U A;  3F43 A;  5DBN A;  3K6M A;  2NRB A;  1N6D A;  2DXN A;  1J7X A;  3DLX A;  5EUU A;  3GHF A;  1SBO A;  2HJ0 A;  3OIR A;  2AHW A;  2KLN A;  4HIZ A;  4GHN A;  4L1C A;  1POI B;  3DUP A;  1M3E A;  3V8V A;  3K50 A;  2AS0 A;  3IF5 A;  3ZXN A;  4DGF A;  4DMG A;  3AGD A;  1TH8 B;  3GVL A;  4AE2 A;  3V97 A;  1FC9 A;  4AEJ A;  1FC6 A;  3MOG A;  5EUZ A;  2KA5 A;  4L8K A;  3AGE A;  3T6O A;  1T6R A;  1XR4 A;  3IHB A;  3LKL A;  4KGB A; 
#chains in the Genus database with same CATH homology
 1POI B;  1OPE A;  1K6D A;  1M3E A;  3CDK B;  3QDQ A;  2NRC A;  2AHU A;  1POI A;  1OOY A;  5DBN B;  3CDK A;  2AHV A;  3RRL B;  3D3U A;  3GK7 A;  5DBN A;  3K6M A;  2NRB A;  3DLX A;  3EH7 A;  3RRL A;  1OOZ A;  2OAS A;  2HJ0 A;  3OXO A;  1XR4 A;  4KGB A;  1O9L A;  2AHW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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