1POIA

Crystal structure of glutaconate coenzyme a-transferase from acidaminococcus fermentans to 2.55 angstoms resolution
Total Genus 119
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
119
sequence length
317
structure length
317
Chain Sequence
SKVMTLKDAIAKYVHSGDHIALGGFTTDRKPYAAVFEILRQGITDLTGLGGAAGGDWDMLIGNGRVKAYINCYTANSGVTNVSRRFRKWFEAGKLTMEDYSQDVIYMMWHAAALGLPFLPVTLMQGSGLTDEWGISKEVRKTLDKVPDDKFKYIDNPFKPGEKVVAVPVPQVDVAIIHAQQASPDGTVRIWGGKFQDVDIAEAAKYTIVTCEEIISDEEIRRDPTKNDIPGMCVDAVVLAPYGAHPSQCYGLYDYDNPFLKVYDKVSKTQEDFDAFCKEWVFDLKDHDEYLNKLGATRLINLKVVPGLGYHIDMTKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords GLUTACONATE COENZYME A-TRANSFERASE
publication title Glutaconate CoA-transferase from Acidaminococcus fermentans: the crystal structure reveals homology with other CoA-transferases.
pubmed doi rcsb
source organism Acidaminococcus fermentans
total genus 119
structure length 317
sequence length 317
chains with identical sequence C
ec nomenclature ec 2.8.3.12: Glutaconate CoA-transferase.
pdb deposition date 1997-01-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.40 Alpha Beta 2-Layer Sandwich Defensin A-like Defensin A-like 1poiA02
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 1poiA01
2AHVA 2AHWA 2NRBA 3CDKA 3CDKB 3D3UA 1XR4A 2AHUA 2OASA 3EH7A 2HJ0A 2NRCA 4KGBA 1OOYA 5DBNA 5DBNB 3RRLA 3RRLB 3OXOA 1OPEA 1M3EA 1K6DA 1OOZA 1POIA 1POIB 1O9LA 3GK7A 3QDQA 3K6MA 3DLXA
chains in the Genus database with same CATH superfamily
1OZZA 3LDOA 1T0ZA 3KVGA 5AQGA 3CDKB 4KYPA 1SN1A 2G2KA 4V1DC 1LQHA 2AHUA 1NGCA 2E88A 1NGBA 3D2FA 5EVZA 4H5NA 1FH3A 3QFUA 5AQMA 1POIB 2M8BB 2KBKA 2JDQD 3GDQA 2QWOA 2NRBA 1ZFUA 3KP0A 3D2EA 2N2RA 2MN5A 5AQZA 2V7ZA 1S3XA 1ZYWA 3KP1A 1ZVEA 3KOWA 3DLXA 2B3CA 5FPMA 2MBKA 3E7UX 3KC6A 3LDPA 1DKGD 2BUPA 5AQWA 2QWMA 2VY6A 1BCGA 5EX5A 1JKZA 5BN9A 1YUWA 5AQLA 3R2VA 1OMYA 3FZMA 2NY8X 4HE7A 1KAXA 1T7AA 3FZHA 3M3ZA 5AQUA 4UAEF 3C7NA 5AQHA 1KAZA 1BA1A 5AQPA 1T1TA 2YIPA 2SN3A 3K6MA 1NGDA 1JXCA 5BN8A 1JZAA 1JZBA 5AQTA 3KOYA 1ATSA 4AEIA 3RRLA 3LDQA 3PSMA 4GNIA 1PTXA 2A7TA 1OOZA 5AQKA 1NGAA 2N2QA 2GL1A 3GKUA 1QQMA 3QI7A 4UAFE 3D2FB 3HSCA 2YILA 2AHWA 2LN8A 2E3FA 2KSKA 3D2EB 3L6QA 5AQOA 1SEGA 2QWPA 4KGBA 3FE1A 3OXOA 5AQIA 1T7EA 5AQQA 2LY5A 1ZU3A 4AAZA 5AQFA 1BRZA 5AR0A 4AB0A 3KOXA 1PE4A 3SF4D 2N66A 2QW9A 2LR3A 3KOZA 2ASCA 1NGIA 1OPEA 4KBOA 1M3EA 1K6DA 1BA0A 3QDQA 1BMRA 1BK8A 1DQ7A 5CY0A 5F1XA 1SN4A 2YC1C 3D3UA 3QMLA 1XRSB 2KBHA 1B7DA 2NRCA 2QXLA 1HJOA 2D56A 1ZUTA 1BUPA 1CN2A 1NGJA 5BPLA 1O9LA 4H5RA 2QWRA 1NGEA 1QQNA 1P00A 5FPDA 3LDLA 2KHOA 5AQRA 1MR4A 3E7RL 1AYJA 4FSVA 5DBNA 3RRLB 2KYQA 1NE5A 3GK7A 4CQKA 5FPEA 1L4VA 2E8AA 1NGFA 3KHWA 5EXWA 3JXUA 1GPSA 2KBJA 3ATUA 2B68A 1ZVGA 5AQYA 3I33A 2KGQA 3GL1A 2BRZA 1C56A 4HHFA 3CDKA 3CQXA 5F0XA 2HJ0A 3L4IA 3FZKA 1GPTA 4UJ0A 1PX9A 2QWNA 2N69A 2E2FA 1POIA 3L56A 3QFPA 1I2VA 4H5VA 1C55A 5AQJA 3FZFA 1I6FA 2YEOA 1XR4A 1KV0A 2LKBA 1HX1A 2KPYA 5KK4A 4H5TA 1OOYA 1ICAA 2LT8A 1I6GA 1I2UA 3FZLA 4IO8A 5F2RA 3CW4A 1QQOA 1TI5A 2QWQA 2AHVA 1VNAA 3BK3C 5AQSA 1CHZA 1B3CA 1NRAA 1T7BA 4FL9A 5AQVA 5BPMA 3EH7A 3LDNA 4H5WA 1P0AA 2LI7A 1UGLA 1K8BA 1LQIA 3C7NB 2NY9X 1HPMA 2ATBA 2MZ0A 2GMOA 1MYNA 1WT7A 2LJMA 2QWLA 3IUCA 1NGHA 2K35A 2E3GA 1NPIA 1KAYA 5AQXA 2LY6A 5AQNA 5DBNB 1DJTA 1SNBA 1WWNA 5BPNA 1NRBA 2LJ7A 1NGGA 1WMTA 4HWIA 1NH5A 2KJAA 4UADE 5EY4A 5FPNA 2YIOA 1LQQA 3AY9A 2OASA 1VNBA 2YBRC 1ATRA 1N4NA 1ZYVA 2I61A 3ATVA 2E0HA 3A8YA 1AHOA
chains in the Genus database with same CATH topology
3QFPA 4H5VA 3LDOA 5F1XA 1NGDA 3KVGA 5AQGA 3CDKB 5AQJA 3FZFA 5BN8A 5AQTA 1XR4A 2AHUA 3D3UA 1ATSA 1HX1A 3QMLA 1NGCA 2E88A 4H5TA 2NRCA 1OOYA 2QXLA 1NGBA 1HJOA 3D2FA 5EVZA 4H5NA 3RRLA 3LDQA 3FZLA 2D56A 4GNIA 4IO8A 5F2RA 1BUPA 3CW4A 3QFUA 5AQMA 1OOZA 1NGJA 5BPLA 1POIB 1QQOA 5AQKA 1O9LA 4H5RA 3GDQA 2JDQD 2QWOA 2QWRA 2QWQA 2AHVA 1NGEA 1QQNA 5FPDA 1NGAA 3BK3C 3LDLA 5AQSA 2NRBA 2KHOA 5AQRA 4FL9A 3D2EA 5AQVA 5BPMA 2MN5A 4FSVA 3EH7A 3LDNA 4H5WA 1QQMA 3QI7A 4UAFE 5AQZA 2V7ZA 5DBNA 3D2FB 3HSCA 3RRLB 3C7NB 1S3XA 1HPMA 3GK7A 3DLXA 2YILA 5FPMA 2AHWA 2LN8A 5FPEA 3QDQA 2GMOA 2MBKA 3D2EB 2E8AA 3L6QA 2QWLA 3IUCA 5AQOA 2QWPA 1NGHA 3KC6A 3LDPA 2K35A 4KGBA 1KAYA 5AQXA 1NGFA 1DKGD 2BUPA 3FE1A 3KHWA 5AQWA 5AQNA 5DBNB 5EXWA 3JXUA 5BPNA 3OXOA 5AQIA 1NGGA 3ATUA 2QWMA 5AQQA 2VY6A 5AQYA 4HWIA 5EY4A 4UADE 5EX5A 3I33A 5FPNA 5BN9A 3GL1A 1YUWA 1BA0A 5AQLA 3R2VA 3FZMA 2YIOA 5AQFA 5AR0A 3CDKA 3CQXA 5F0XA 3AY9A 1KAXA 3SF4D 2OASA 2HJ0A 3FZHA 3M3ZA 2QW9A 3L4IA 3FZKA 5AQUA 4UAEF 3C7NA 5AQHA 1ATRA 1NGIA 1OPEA 4KBOA 1KAZA 1BA1A 1M3EA 3ATVA 1K6DA 2QWNA 3A8YA 5AQPA 2E2FA 1POIA 2YIPA 3L56A 3K6MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AHV A;  2AHW A;  2NRB A;  3CDK A;  3CDK B;  3D3U A;  1XR4 A;  2AHU A;  2OAS A;  3EH7 A;  2HJ0 A;  2NRC A;  4KGB A;  1OOY A;  5DBN A;  5DBN B;  3RRL A;  3RRL B;  3OXO A;  1OPE A;  1M3E A;  1K6D A;  1OOZ A;  1POI A;  1POI B;  1O9L A;  3GK7 A;  3QDQ A;  3K6M A;  3DLX A; 
#chains in the Genus database with same CATH topology
 1OZZ A;  3LDO A;  1T0Z A;  3KVG A;  5AQG A;  3CDK B;  4KYP A;  1SN1 A;  2G2K A;  4V1D C;  1LQH A;  2AHU A;  1NGC A;  2E88 A;  1NGB A;  3D2F A;  5EVZ A;  4H5N A;  1FH3 A;  3QFU A;  5AQM A;  1POI B;  2M8B B;  2KBK A;  2JDQ D;  3GDQ A;  2QWO A;  2NRB A;  1ZFU A;  3KP0 A;  3D2E A;  2N2R A;  2MN5 A;  5AQZ A;  2V7Z A;  1S3X A;  1ZYW A;  3KP1 A;  1ZVE A;  3KOW A;  3DLX A;  2B3C A;  5FPM A;  2MBK A;  3E7U X;  3KC6 A;  3LDP A;  1DKG D;  2BUP A;  5AQW A;  2QWM A;  2VY6 A;  1BCG A;  5EX5 A;  1JKZ A;  5BN9 A;  1YUW A;  5AQL A;  3R2V A;  1OMY A;  3FZM A;  2NY8 X;  4HE7 A;  1KAX A;  1T7A A;  3FZH A;  3M3Z A;  5AQU A;  4UAE F;  3C7N A;  5AQH A;  1KAZ A;  1BA1 A;  5AQP A;  1T1T A;  2YIP A;  2SN3 A;  3K6M A;  1NGD A;  1JXC A;  5BN8 A;  1JZA A;  1JZB A;  5AQT A;  3KOY A;  1ATS A;  4AEI A;  3RRL A;  3LDQ A;  3PSM A;  4GNI A;  1PTX A;  2A7T A;  1OOZ A;  5AQK A;  1NGA A;  2N2Q A;  2GL1 A;  3GKU A;  1QQM A;  3QI7 A;  4UAF E;  3D2F B;  3HSC A;  2YIL A;  2AHW A;  2LN8 A;  2E3F A;  2KSK A;  3D2E B;  3L6Q A;  5AQO A;  1SEG A;  2QWP A;  4KGB A;  3FE1 A;  3OXO A;  5AQI A;  1T7E A;  5AQQ A;  2LY5 A;  1ZU3 A;  4AAZ A;  5AQF A;  1BRZ A;  5AR0 A;  4AB0 A;  3KOX A;  1PE4 A;  3SF4 D;  2N66 A;  2QW9 A;  2LR3 A;  3KOZ A;  2ASC A;  1NGI A;  1OPE A;  4KBO A;  1M3E A;  1K6D A;  1BA0 A;  3QDQ A;  1BMR A;  1BK8 A;  1DQ7 A;  5CY0 A;  5F1X A;  1SN4 A;  2YC1 C;  3D3U A;  3QML A;  1XRS B;  2KBH A;  1B7D A;  2NRC A;  2QXL A;  1HJO A;  2D56 A;  1ZUT A;  1BUP A;  1CN2 A;  1NGJ A;  5BPL A;  1O9L A;  4H5R A;  2QWR A;  1NGE A;  1QQN A;  1P00 A;  5FPD A;  3LDL A;  2KHO A;  5AQR A;  1MR4 A;  3E7R L;  1AYJ A;  4FSV A;  5DBN A;  3RRL B;  2KYQ A;  1NE5 A;  3GK7 A;  4CQK A;  5FPE A;  1L4V A;  2E8A A;  1NGF A;  3KHW A;  5EXW A;  3JXU A;  1GPS A;  2KBJ A;  3ATU A;  2B68 A;  1ZVG A;  5AQY A;  3I33 A;  2KGQ A;  3GL1 A;  2BRZ A;  1C56 A;  4HHF A;  3CDK A;  3CQX A;  5F0X A;  2HJ0 A;  3L4I A;  3FZK A;  1GPT A;  4UJ0 A;  1PX9 A;  2QWN A;  2N69 A;  2E2F A;  1POI A;  3L56 A;  3QFP A;  1I2V A;  4H5V A;  1C55 A;  5AQJ A;  3FZF A;  1I6F A;  2YEO A;  1XR4 A;  1KV0 A;  2LKB A;  1HX1 A;  2KPY A;  5KK4 A;  4H5T A;  1OOY A;  1ICA A;  2LT8 A;  1I6G A;  1I2U A;  3FZL A;  4IO8 A;  5F2R A;  3CW4 A;  1QQO A;  1TI5 A;  2QWQ A;  2AHV A;  1VNA A;  3BK3 C;  5AQS A;  1CHZ A;  1B3C A;  1NRA A;  1T7B A;  4FL9 A;  5AQV A;  5BPM A;  3EH7 A;  3LDN A;  4H5W A;  1P0A A;  2LI7 A;  1UGL A;  1K8B A;  1LQI A;  3C7N B;  2NY9 X;  1HPM A;  2ATB A;  2MZ0 A;  2GMO A;  1MYN A;  1WT7 A;  2LJM A;  2QWL A;  3IUC A;  1NGH A;  2K35 A;  2E3G A;  1NPI A;  1KAY A;  5AQX A;  2LY6 A;  5AQN A;  5DBN B;  1DJT A;  1SNB A;  1WWN A;  5BPN A;  1NRB A;  2LJ7 A;  1NGG A;  1WMT A;  4HWI A;  1NH5 A;  2KJA A;  4UAD E;  5EY4 A;  5FPN A;  2YIO A;  1LQQ A;  3AY9 A;  2OAS A;  1VNB A;  2YBR C;  1ATR A;  1N4N A;  1ZYV A;  2I61 A;  3ATV A;  2E0H A;  3A8Y A;  1AHO A; 
#chains in the Genus database with same CATH homology
 3QFP A;  4H5V A;  3LDO A;  5F1X A;  1NGD A;  3KVG A;  5AQG A;  3CDK B;  5AQJ A;  3FZF A;  5BN8 A;  5AQT A;  1XR4 A;  2AHU A;  3D3U A;  1ATS A;  1HX1 A;  3QML A;  1NGC A;  2E88 A;  4H5T A;  2NRC A;  1OOY A;  2QXL A;  1NGB A;  1HJO A;  3D2F A;  5EVZ A;  4H5N A;  3RRL A;  3LDQ A;  3FZL A;  2D56 A;  4GNI A;  4IO8 A;  5F2R A;  1BUP A;  3CW4 A;  3QFU A;  5AQM A;  1OOZ A;  1NGJ A;  5BPL A;  1POI B;  1QQO A;  5AQK A;  1O9L A;  4H5R A;  3GDQ A;  2JDQ D;  2QWO A;  2QWR A;  2QWQ A;  2AHV A;  1NGE A;  1QQN A;  5FPD A;  1NGA A;  3BK3 C;  3LDL A;  5AQS A;  2NRB A;  2KHO A;  5AQR A;  4FL9 A;  3D2E A;  5AQV A;  5BPM A;  2MN5 A;  4FSV A;  3EH7 A;  3LDN A;  4H5W A;  1QQM A;  3QI7 A;  4UAF E;  5AQZ A;  2V7Z A;  5DBN A;  3D2F B;  3HSC A;  3RRL B;  3C7N B;  1S3X A;  1HPM A;  3GK7 A;  3DLX A;  2YIL A;  5FPM A;  2AHW A;  2LN8 A;  5FPE A;  3QDQ A;  2GMO A;  2MBK A;  3D2E B;  2E8A A;  3L6Q A;  2QWL A;  3IUC A;  5AQO A;  2QWP A;  1NGH A;  3KC6 A;  3LDP A;  2K35 A;  4KGB A;  1KAY A;  5AQX A;  1NGF A;  1DKG D;  2BUP A;  3FE1 A;  3KHW A;  5AQW A;  5AQN A;  5DBN B;  5EXW A;  3JXU A;  5BPN A;  3OXO A;  5AQI A;  1NGG A;  3ATU A;  2QWM A;  5AQQ A;  2VY6 A;  5AQY A;  4HWI A;  5EY4 A;  4UAD E;  5EX5 A;  3I33 A;  5FPN A;  5BN9 A;  3GL1 A;  1YUW A;  1BA0 A;  5AQL A;  3R2V A;  3FZM A;  2YIO A;  5AQF A;  5AR0 A;  3CDK A;  3CQX A;  5F0X A;  3AY9 A;  1KAX A;  3SF4 D;  2OAS A;  2HJ0 A;  3FZH A;  3M3Z A;  2QW9 A;  3L4I A;  3FZK A;  5AQU A;  4UAE F;  3C7N A;  5AQH A;  1ATR A;  1NGI A;  1OPE A;  4KBO A;  1KAZ A;  1BA1 A;  1M3E A;  3ATV A;  1K6D A;  2QWN A;  3A8Y A;  5AQP A;  2E2F A;  1POI A;  2YIP A;  3L56 A;  3K6M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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