1O9LA

Succinate:coenzyme-a transferase (pig heart)
Total Genus 131
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
131
sequence length
481
structure length
468
Chain Sequence
TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIERLSVRKNVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Succinate:Coenzyme-A Transferase Deficiency: A Structural View of Pathogenic Mutations
rcsb
molecule tags Transferase
molecule keywords SUCCINYL-COA\:3-KETOACID-COENZYME A TRANSFERASE
total genus 131
structure length 468
sequence length 481
chains with identical sequence B, C, D
ec nomenclature ec 2.8.3.5: 3-oxoacid CoA-transferase.
pdb deposition date 2002-12-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 1o9lA01
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 1o9lA02
4KGBA 1M3EA 2AHUA 2NRBA 2AHWA 1OPEA 1POIA 3RRLA 3QDQA 5DBNA 2NRCA 3EH7A 3CDKA 1OOZA 2AHVA 1POIB 3OXOA 1XR4A 2HJ0A 1O9LA 3RRLB 3GK7A 5DBNB 1K6DA 3CDKB 3D3UA 1OOYA 2OASA 3K6MA 3DLXA
chains in the Genus database with same CATH superfamily
4KGBA 1M3EA 2AHUA 2NRBA 2AHWA 1OPEA 1POIA 3RRLA 3QDQA 5DBNA 2NRCA 3EH7A 3CDKA 1OOZA 2AHVA 1POIB 3OXOA 1XR4A 2HJ0A 1O9LA 3RRLB 3GK7A 5DBNB 1K6DA 3CDKB 3D3UA 1OOYA 2OASA 3K6MA 3DLXA
chains in the Genus database with same CATH topology
4KGBA 1M3EA 2AHUA 2NRBA 2AHWA 1OPEA 1POIA 3RRLA 3QDQA 5DBNA 2NRCA 3EH7A 3CDKA 1OOZA 2AHVA 1POIB 3OXOA 1XR4A 2HJ0A 1O9LA 3RRLB 3GK7A 5DBNB 1K6DA 3CDKB 3D3UA 1OOYA 2OASA 3K6MA 3DLXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KGB A;  1M3E A;  2AHU A;  2NRB A;  2AHW A;  1OPE A;  1POI A;  3RRL A;  3QDQ A;  5DBN A;  2NRC A;  3EH7 A;  3CDK A;  1OOZ A;  2AHV A;  1POI B;  3OXO A;  1XR4 A;  2HJ0 A;  1O9L A;  3RRL B;  3GK7 A;  5DBN B;  1K6D A;  3CDK B;  3D3U A;  1OOY A;  2OAS A;  3K6M A;  3DLX A; 
#chains in the Genus database with same CATH topology
 4KGB A;  1M3E A;  2AHU A;  2NRB A;  2AHW A;  1OPE A;  1POI A;  3RRL A;  3QDQ A;  5DBN A;  2NRC A;  3EH7 A;  3CDK A;  1OOZ A;  2AHV A;  1POI B;  3OXO A;  1XR4 A;  2HJ0 A;  1O9L A;  3RRL B;  3GK7 A;  5DBN B;  1K6D A;  3CDK B;  3D3U A;  1OOY A;  2OAS A;  3K6M A;  3DLX A; 
#chains in the Genus database with same CATH homology
 4KGB A;  1M3E A;  2AHU A;  2NRB A;  2AHW A;  1OPE A;  1POI A;  3RRL A;  3QDQ A;  5DBN A;  2NRC A;  3EH7 A;  3CDK A;  1OOZ A;  2AHV A;  1POI B;  3OXO A;  1XR4 A;  2HJ0 A;  1O9L A;  3RRL B;  3GK7 A;  5DBN B;  1K6D A;  3CDK B;  3D3U A;  1OOY A;  2OAS A;  3K6M A;  3DLX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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