1M1PA

P21 crystal structure of the tetraheme cytochrome c3 from shewanella oneidensis mr1
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
87
structure length
87
Chain Sequence
QKLSDFHAESGGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRTSASVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structures at atomic resolution reveal the novel concept of 'electron-harvesting' as a role for the small tetraheme cytochrome c
pubmed doi rcsb
molecule tags Electron transport
molecule keywords Small tetraheme cytochrome c
total genus 20
structure length 87
sequence length 87
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2002-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14537 Cytochrom_c3_2 Cytochrome c3
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1130.10 Mainly Alpha Orthogonal Bundle Flavocytochrome C3; Chain A, domain 2 Flavocytochrome C3; Chain A 1m1pA00
4L3XA 3LG1A 3SXQA 3TORA 3BNJA 2E81A 1M1RA 1Q9IA 1JNIA 2VR0A 4L3ZA 4L38A 3BNGA 1JRZA 1D4DA 4L3YA 3SCEA 1QJDA 2K3VA 1KSSA 3OWMA 1FS8A 1JRYA 1M1PA 3TTBA 1E39A 1Y0PA 4Q0TA 1M1QA 4Q4UA 2J7AA 1SP3A 2E80A 1QO8A 1OAHA 3BNFA 4Q5BA 4Q17A 1KSUA 2RDZA 2OT4A 2ZO5A 3S7WA 1JRXA 4WJYA 1P2EA 1D4CA 1M64A 1P2HA 3L1TA 1FS7A 1D4EA 2RF7A 3GM6A 1LJ1A 3LGQA 3RKHA 1FT6A 2B7RA 4Q5CA 4Q1OA 1QDBA 3D1IA 3UU9A 3UBRA 1FS9A 3BNHA 3F29A 1BVBA 2B7SA 1GU6A 3MMOA 3FO3A 1FT5A
chains in the Genus database with same CATH superfamily
4L3XA 3LG1A 3SXQA 3TORA 3BNJA 2E81A 1M1RA 1Q9IA 1JNIA 2VR0A 4L3ZA 4L38A 3BNGA 1JRZA 1D4DA 4L3YA 3SCEA 1QJDA 2K3VA 1KSSA 3OWMA 1FS8A 1JRYA 1M1PA 3TTBA 1E39A 1Y0PA 4Q0TA 1M1QA 2CZSA 4Q4UA 2J7AA 1SP3A 2E80A 1QO8A 1OAHA 3BNFA 4Q5BA 4Q17A 1KSUA 2RDZA 2OT4A 2ZO5A 3S7WA 1JRXA 4WJYA 1P2EA 1D4CA 1M64A 1P2HA 3L1TA 1FS7A 1D4EA 2RF7A 3GM6A 1LJ1A 3LGQA 3RKHA 1FT6A 2B7RA 4Q5CA 4Q1OA 1QDBA 3D1IA 3UU9A 3UBRA 1FS9A 3BNHA 3F29A 1BVBA 2B7SA 1GU6A 3MMOA 3FO3A 1FT5A
chains in the Genus database with same CATH topology
4L3XA 3LG1A 3SXQA 3TORA 3BNJA 2E81A 1M1RA 1Q9IA 1JNIA 2VR0A 4L3ZA 4L38A 3BNGA 1JRZA 1D4DA 4L3YA 3SCEA 1QJDA 2K3VA 1KSSA 3OWMA 1FS8A 1JRYA 1M1PA 3TTBA 1E39A 1Y0PA 4Q0TA 1M1QA 4Q4UA 2J7AA 1SP3A 2E80A 1QO8A 1OAHA 3BNFA 4Q5BA 4Q17A 1KSUA 2RDZA 2OT4A 2ZO5A 3S7WA 1JRXA 4WJYA 1P2EA 1D4CA 1M64A 1P2HA 3L1TA 1FS7A 1D4EA 2RF7A 3GM6A 1LJ1A 3LGQA 3RKHA 1FT6A 2B7RA 4Q5CA 4Q1OA 1QDBA 3D1IA 3UU9A 3UBRA 1FS9A 3BNHA 3F29A 1BVBA 2B7SA 1GU6A 3MMOA 3FO3A 1FT5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4L3X A;  3LG1 A;  3SXQ A;  3TOR A;  3BNJ A;  2E81 A;  1M1R A;  1Q9I A;  1JNI A;  2VR0 A;  4L3Z A;  4L38 A;  3BNG A;  1JRZ A;  1D4D A;  4L3Y A;  3SCE A;  1QJD A;  2K3V A;  1KSS A;  3OWM A;  1FS8 A;  1JRY A;  1M1P A;  3TTB A;  1E39 A;  1Y0P A;  4Q0T A;  1M1Q A;  4Q4U A;  2J7A A;  1SP3 A;  2E80 A;  1QO8 A;  1OAH A;  3BNF A;  4Q5B A;  4Q17 A;  1KSU A;  2RDZ A;  2OT4 A;  2ZO5 A;  3S7W A;  1JRX A;  4WJY A;  1P2E A;  1D4C A;  1M64 A;  1P2H A;  3L1T A;  1FS7 A;  1D4E A;  2RF7 A;  3GM6 A;  1LJ1 A;  3LGQ A;  3RKH A;  1FT6 A;  2B7R A;  4Q5C A;  4Q1O A;  1QDB A;  3D1I A;  3UU9 A;  3UBR A;  1FS9 A;  3BNH A;  3F29 A;  1BVB A;  2B7S A;  1GU6 A;  3MMO A;  3FO3 A;  1FT5 A; 
#chains in the Genus database with same CATH topology
 4L3X A;  3LG1 A;  3SXQ A;  3TOR A;  3BNJ A;  2E81 A;  1M1R A;  1Q9I A;  1JNI A;  2VR0 A;  4L3Z A;  4L38 A;  3BNG A;  1JRZ A;  1D4D A;  4L3Y A;  3SCE A;  1QJD A;  2K3V A;  1KSS A;  3OWM A;  1FS8 A;  1JRY A;  1M1P A;  3TTB A;  1E39 A;  1Y0P A;  4Q0T A;  1M1Q A;  2CZS A;  4Q4U A;  2J7A A;  1SP3 A;  2E80 A;  1QO8 A;  1OAH A;  3BNF A;  4Q5B A;  4Q17 A;  1KSU A;  2RDZ A;  2OT4 A;  2ZO5 A;  3S7W A;  1JRX A;  4WJY A;  1P2E A;  1D4C A;  1M64 A;  1P2H A;  3L1T A;  1FS7 A;  1D4E A;  2RF7 A;  3GM6 A;  1LJ1 A;  3LGQ A;  3RKH A;  1FT6 A;  2B7R A;  4Q5C A;  4Q1O A;  1QDB A;  3D1I A;  3UU9 A;  3UBR A;  1FS9 A;  3BNH A;  3F29 A;  1BVB A;  2B7S A;  1GU6 A;  3MMO A;  3FO3 A;  1FT5 A; 
#chains in the Genus database with same CATH homology
 4L3X A;  3LG1 A;  3SXQ A;  3TOR A;  3BNJ A;  2E81 A;  1M1R A;  1Q9I A;  1JNI A;  2VR0 A;  4L3Z A;  4L38 A;  3BNG A;  1JRZ A;  1D4D A;  4L3Y A;  3SCE A;  1QJD A;  2K3V A;  1KSS A;  3OWM A;  1FS8 A;  1JRY A;  1M1P A;  3TTB A;  1E39 A;  1Y0P A;  4Q0T A;  1M1Q A;  4Q4U A;  2J7A A;  1SP3 A;  2E80 A;  1QO8 A;  1OAH A;  3BNF A;  4Q5B A;  4Q17 A;  1KSU A;  2RDZ A;  2OT4 A;  2ZO5 A;  3S7W A;  1JRX A;  4WJY A;  1P2E A;  1D4C A;  1M64 A;  1P2H A;  3L1T A;  1FS7 A;  1D4E A;  2RF7 A;  3GM6 A;  1LJ1 A;  3LGQ A;  3RKH A;  1FT6 A;  2B7R A;  4Q5C A;  4Q1O A;  1QDB A;  3D1I A;  3UU9 A;  3UBR A;  1FS9 A;  3BNH A;  3F29 A;  1BVB A;  2B7S A;  1GU6 A;  3MMO A;  3FO3 A;  1FT5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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