1M1QA

P222 oxidized structure of the tetraheme cytochrome c from shewanella oneidensis mr1
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
90
structure length
90
Chain Sequence
DQKLSDFHAESGGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRTSASVLKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structures at atomic resolution reveal the novel concept of 'electron-harvesting' as a role for the small tetraheme cytochrome c
pubmed doi rcsb
molecule tags Electron transport
molecule keywords small tetraheme cytochrome c
total genus 22
structure length 90
sequence length 90
ec nomenclature
pdb deposition date 2002-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14537 Cytochrom_c3_2 Cytochrome c3
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1130.10 Mainly Alpha Orthogonal Bundle Flavocytochrome C3; Chain A, domain 2 Flavocytochrome C3; Chain A 1m1qA00
2VR0A 1M1PA 3RKHA 1M64A 2J7AA 1FS9A 1P2HA 1LJ1A 3UBRA 3F29A 4Q0TA 1JRZA 1OAHA 2B7SA 2OT4A 1Y0PA 1Q9IA 3S7WA 3LG1A 1GU6A 1JRXA 2RDZA 3SCEA 1SP3A 3D1IA 2B7RA 3FO3A 3MMOA 4L3XA 1FT6A 1FS8A 3BNHA 1QJDA 4WJYA 3TORA 3BNJA 3L1TA 3SXQA 1JRYA 1D4EA 3LGQA 4L38A 1E39A 4Q5BA 4Q17A 3GM6A 1D4DA 3OWMA 1QDBA 2E80A 4Q1OA 4Q5CA 1FS7A 4Q4UA 2K3VA 2RF7A 1JNIA 1KSUA 2ZO5A 4L3YA 3UU9A 1QO8A 1BVBA 3TTBA 3BNGA 1M1QA 1FT5A 1KSSA 1P2EA 3BNFA 4L3ZA 1D4CA 1M1RA 2E81A
chains in the Genus database with same CATH superfamily
2VR0A 1M1PA 3RKHA 1M64A 2J7AA 1FS9A 1P2HA 1LJ1A 3UBRA 3F29A 4Q0TA 1JRZA 1OAHA 2B7SA 2OT4A 1Y0PA 1Q9IA 3S7WA 3LG1A 1GU6A 1JRXA 2RDZA 3SCEA 1SP3A 3D1IA 2B7RA 3FO3A 3MMOA 4L3XA 1FT6A 1FS8A 3BNHA 1QJDA 4WJYA 3TORA 3BNJA 3L1TA 3SXQA 1JRYA 1D4EA 3LGQA 4L38A 1E39A 4Q5BA 4Q17A 3GM6A 1D4DA 3OWMA 1QDBA 2E80A 2CZSA 4Q1OA 4Q5CA 1FS7A 4Q4UA 2K3VA 2RF7A 1JNIA 1KSUA 2ZO5A 4L3YA 3UU9A 1QO8A 1BVBA 3TTBA 3BNGA 1M1QA 1FT5A 1KSSA 1P2EA 3BNFA 4L3ZA 1D4CA 1M1RA 2E81A
chains in the Genus database with same CATH topology
2VR0A 1M1PA 3RKHA 1M64A 2J7AA 1FS9A 1P2HA 1LJ1A 3UBRA 3F29A 4Q0TA 1JRZA 1OAHA 2B7SA 2OT4A 1Y0PA 1Q9IA 3S7WA 3LG1A 1GU6A 1JRXA 2RDZA 3SCEA 1SP3A 3D1IA 2B7RA 3FO3A 3MMOA 4L3XA 1FT6A 1FS8A 3BNHA 1QJDA 4WJYA 3TORA 3BNJA 3L1TA 3SXQA 1JRYA 1D4EA 3LGQA 4L38A 1E39A 4Q5BA 4Q17A 3GM6A 1D4DA 3OWMA 1QDBA 2E80A 4Q1OA 4Q5CA 1FS7A 4Q4UA 2K3VA 2RF7A 1JNIA 1KSUA 2ZO5A 4L3YA 3UU9A 1QO8A 1BVBA 3TTBA 3BNGA 1M1QA 1FT5A 1KSSA 1P2EA 3BNFA 4L3ZA 1D4CA 1M1RA 2E81A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VR0 A;  1M1P A;  3RKH A;  1M64 A;  2J7A A;  1FS9 A;  1P2H A;  1LJ1 A;  3UBR A;  3F29 A;  4Q0T A;  1JRZ A;  1OAH A;  2B7S A;  2OT4 A;  1Y0P A;  1Q9I A;  3S7W A;  3LG1 A;  1GU6 A;  1JRX A;  2RDZ A;  3SCE A;  1SP3 A;  3D1I A;  2B7R A;  3FO3 A;  3MMO A;  4L3X A;  1FT6 A;  1FS8 A;  3BNH A;  1QJD A;  4WJY A;  3TOR A;  3BNJ A;  3L1T A;  3SXQ A;  1JRY A;  1D4E A;  3LGQ A;  4L38 A;  1E39 A;  4Q5B A;  4Q17 A;  3GM6 A;  1D4D A;  3OWM A;  1QDB A;  2E80 A;  4Q1O A;  4Q5C A;  1FS7 A;  4Q4U A;  2K3V A;  2RF7 A;  1JNI A;  1KSU A;  2ZO5 A;  4L3Y A;  3UU9 A;  1QO8 A;  1BVB A;  3TTB A;  3BNG A;  1M1Q A;  1FT5 A;  1KSS A;  1P2E A;  3BNF A;  4L3Z A;  1D4C A;  1M1R A;  2E81 A; 
#chains in the Genus database with same CATH topology
 2VR0 A;  1M1P A;  3RKH A;  1M64 A;  2J7A A;  1FS9 A;  1P2H A;  1LJ1 A;  3UBR A;  3F29 A;  4Q0T A;  1JRZ A;  1OAH A;  2B7S A;  2OT4 A;  1Y0P A;  1Q9I A;  3S7W A;  3LG1 A;  1GU6 A;  1JRX A;  2RDZ A;  3SCE A;  1SP3 A;  3D1I A;  2B7R A;  3FO3 A;  3MMO A;  4L3X A;  1FT6 A;  1FS8 A;  3BNH A;  1QJD A;  4WJY A;  3TOR A;  3BNJ A;  3L1T A;  3SXQ A;  1JRY A;  1D4E A;  3LGQ A;  4L38 A;  1E39 A;  4Q5B A;  4Q17 A;  3GM6 A;  1D4D A;  3OWM A;  1QDB A;  2E80 A;  2CZS A;  4Q1O A;  4Q5C A;  1FS7 A;  4Q4U A;  2K3V A;  2RF7 A;  1JNI A;  1KSU A;  2ZO5 A;  4L3Y A;  3UU9 A;  1QO8 A;  1BVB A;  3TTB A;  3BNG A;  1M1Q A;  1FT5 A;  1KSS A;  1P2E A;  3BNF A;  4L3Z A;  1D4C A;  1M1R A;  2E81 A; 
#chains in the Genus database with same CATH homology
 2VR0 A;  1M1P A;  3RKH A;  1M64 A;  2J7A A;  1FS9 A;  1P2H A;  1LJ1 A;  3UBR A;  3F29 A;  4Q0T A;  1JRZ A;  1OAH A;  2B7S A;  2OT4 A;  1Y0P A;  1Q9I A;  3S7W A;  3LG1 A;  1GU6 A;  1JRX A;  2RDZ A;  3SCE A;  1SP3 A;  3D1I A;  2B7R A;  3FO3 A;  3MMO A;  4L3X A;  1FT6 A;  1FS8 A;  3BNH A;  1QJD A;  4WJY A;  3TOR A;  3BNJ A;  3L1T A;  3SXQ A;  1JRY A;  1D4E A;  3LGQ A;  4L38 A;  1E39 A;  4Q5B A;  4Q17 A;  3GM6 A;  1D4D A;  3OWM A;  1QDB A;  2E80 A;  4Q1O A;  4Q5C A;  1FS7 A;  4Q4U A;  2K3V A;  2RF7 A;  1JNI A;  1KSU A;  2ZO5 A;  4L3Y A;  3UU9 A;  1QO8 A;  1BVB A;  3TTB A;  3BNG A;  1M1Q A;  1FT5 A;  1KSS A;  1P2E A;  3BNF A;  4L3Z A;  1D4C A;  1M1R A;  2E81 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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