1M1RA

Reduced p222 crystal structure of the tetraheme cytochrome c of shewanella oneidensis mr1
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
91
structure length
91
Chain Sequence
ADQKLSDFHAESGGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRTSASVLKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structures at atomic resolution reveal the novel concept of 'electron-harvesting' as a role for the small tetraheme cytochrome c
pubmed doi rcsb
molecule tags Electron transport
molecule keywords SMALL tetraheme cytochrome c
total genus 23
structure length 91
sequence length 91
ec nomenclature
pdb deposition date 2002-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14537 Cytochrom_c3_2 Cytochrome c3
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1130.10 Mainly Alpha Orthogonal Bundle Flavocytochrome C3; Chain A, domain 2 Flavocytochrome C3; Chain A 1m1rA00
3F29A 2E80A 1M1RA 3UBRA 3UU9A 4Q4UA 1E39A 3LG1A 2K3VA 4Q5CA 3RKHA 3TTBA 2VR0A 1QO8A 4L38A 1JRXA 1KSSA 1P2HA 2B7RA 1M1QA 3FO3A 2OT4A 1JNIA 4Q17A 3OWMA 1FS9A 3BNGA 1D4DA 3MMOA 1BVBA 1SP3A 1M1PA 1KSUA 1JRZA 1D4EA 3BNFA 3BNHA 3D1IA 4L3YA 4L3ZA 1GU6A 4WJYA 2ZO5A 3S7WA 1QJDA 3TORA 1FT5A 2J7AA 2RF7A 1JRYA 2B7SA 4Q1OA 4Q0TA 1FS7A 3BNJA 1FS8A 2RDZA 1FT6A 1Y0PA 1D4CA 1P2EA 4Q5BA 3SCEA 1M64A 3SXQA 1OAHA 3GM6A 1LJ1A 1QDBA 4L3XA 3LGQA 3L1TA 1Q9IA 2E81A
chains in the Genus database with same CATH superfamily
3F29A 2E80A 1M1RA 3UBRA 3UU9A 4Q4UA 1E39A 3LG1A 2K3VA 4Q5CA 3RKHA 3TTBA 2VR0A 1QO8A 4L38A 1JRXA 1KSSA 1P2HA 2B7RA 1M1QA 3FO3A 2OT4A 1JNIA 4Q17A 3OWMA 1FS9A 3BNGA 1D4DA 3MMOA 1BVBA 1SP3A 1M1PA 1KSUA 1JRZA 1D4EA 3BNFA 3BNHA 3D1IA 4L3YA 4L3ZA 1GU6A 4WJYA 2ZO5A 3S7WA 1QJDA 3TORA 1FT5A 2J7AA 2RF7A 1JRYA 2B7SA 4Q1OA 4Q0TA 1FS7A 3BNJA 1FS8A 2RDZA 1FT6A 1Y0PA 1D4CA 1P2EA 4Q5BA 3SCEA 1M64A 3SXQA 1OAHA 3GM6A 1LJ1A 1QDBA 4L3XA 3LGQA 3L1TA 1Q9IA 2CZSA 2E81A
chains in the Genus database with same CATH topology
3F29A 2E80A 1M1RA 3UBRA 3UU9A 4Q4UA 1E39A 3LG1A 2K3VA 4Q5CA 3RKHA 3TTBA 2VR0A 1QO8A 4L38A 1JRXA 1KSSA 1P2HA 2B7RA 1M1QA 3FO3A 2OT4A 1JNIA 4Q17A 3OWMA 1FS9A 3BNGA 1D4DA 3MMOA 1BVBA 1SP3A 1M1PA 1KSUA 1JRZA 1D4EA 3BNFA 3BNHA 3D1IA 4L3YA 4L3ZA 1GU6A 4WJYA 2ZO5A 3S7WA 1QJDA 3TORA 1FT5A 2J7AA 2RF7A 1JRYA 2B7SA 4Q1OA 4Q0TA 1FS7A 3BNJA 1FS8A 2RDZA 1FT6A 1Y0PA 1D4CA 1P2EA 4Q5BA 3SCEA 1M64A 3SXQA 1OAHA 3GM6A 1LJ1A 1QDBA 4L3XA 3LGQA 3L1TA 1Q9IA 2E81A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3F29 A;  2E80 A;  1M1R A;  3UBR A;  3UU9 A;  4Q4U A;  1E39 A;  3LG1 A;  2K3V A;  4Q5C A;  3RKH A;  3TTB A;  2VR0 A;  1QO8 A;  4L38 A;  1JRX A;  1KSS A;  1P2H A;  2B7R A;  1M1Q A;  3FO3 A;  2OT4 A;  1JNI A;  4Q17 A;  3OWM A;  1FS9 A;  3BNG A;  1D4D A;  3MMO A;  1BVB A;  1SP3 A;  1M1P A;  1KSU A;  1JRZ A;  1D4E A;  3BNF A;  3BNH A;  3D1I A;  4L3Y A;  4L3Z A;  1GU6 A;  4WJY A;  2ZO5 A;  3S7W A;  1QJD A;  3TOR A;  1FT5 A;  2J7A A;  2RF7 A;  1JRY A;  2B7S A;  4Q1O A;  4Q0T A;  1FS7 A;  3BNJ A;  1FS8 A;  2RDZ A;  1FT6 A;  1Y0P A;  1D4C A;  1P2E A;  4Q5B A;  3SCE A;  1M64 A;  3SXQ A;  1OAH A;  3GM6 A;  1LJ1 A;  1QDB A;  4L3X A;  3LGQ A;  3L1T A;  1Q9I A;  2E81 A; 
#chains in the Genus database with same CATH topology
 3F29 A;  2E80 A;  1M1R A;  3UBR A;  3UU9 A;  4Q4U A;  1E39 A;  3LG1 A;  2K3V A;  4Q5C A;  3RKH A;  3TTB A;  2VR0 A;  1QO8 A;  4L38 A;  1JRX A;  1KSS A;  1P2H A;  2B7R A;  1M1Q A;  3FO3 A;  2OT4 A;  1JNI A;  4Q17 A;  3OWM A;  1FS9 A;  3BNG A;  1D4D A;  3MMO A;  1BVB A;  1SP3 A;  1M1P A;  1KSU A;  1JRZ A;  1D4E A;  3BNF A;  3BNH A;  3D1I A;  4L3Y A;  4L3Z A;  1GU6 A;  4WJY A;  2ZO5 A;  3S7W A;  1QJD A;  3TOR A;  1FT5 A;  2J7A A;  2RF7 A;  1JRY A;  2B7S A;  4Q1O A;  4Q0T A;  1FS7 A;  3BNJ A;  1FS8 A;  2RDZ A;  1FT6 A;  1Y0P A;  1D4C A;  1P2E A;  4Q5B A;  3SCE A;  1M64 A;  3SXQ A;  1OAH A;  3GM6 A;  1LJ1 A;  1QDB A;  4L3X A;  3LGQ A;  3L1T A;  1Q9I A;  2CZS A;  2E81 A; 
#chains in the Genus database with same CATH homology
 3F29 A;  2E80 A;  1M1R A;  3UBR A;  3UU9 A;  4Q4U A;  1E39 A;  3LG1 A;  2K3V A;  4Q5C A;  3RKH A;  3TTB A;  2VR0 A;  1QO8 A;  4L38 A;  1JRX A;  1KSS A;  1P2H A;  2B7R A;  1M1Q A;  3FO3 A;  2OT4 A;  1JNI A;  4Q17 A;  3OWM A;  1FS9 A;  3BNG A;  1D4D A;  3MMO A;  1BVB A;  1SP3 A;  1M1P A;  1KSU A;  1JRZ A;  1D4E A;  3BNF A;  3BNH A;  3D1I A;  4L3Y A;  4L3Z A;  1GU6 A;  4WJY A;  2ZO5 A;  3S7W A;  1QJD A;  3TOR A;  1FT5 A;  2J7A A;  2RF7 A;  1JRY A;  2B7S A;  4Q1O A;  4Q0T A;  1FS7 A;  3BNJ A;  1FS8 A;  2RDZ A;  1FT6 A;  1Y0P A;  1D4C A;  1P2E A;  4Q5B A;  3SCE A;  1M64 A;  3SXQ A;  1OAH A;  3GM6 A;  1LJ1 A;  1QDB A;  4L3X A;  3LGQ A;  3L1T A;  1Q9I A;  2E81 A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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