1NVVS

Structural evidence for feedback activation by rasgtp of the ras-specific nucleotide exchange factor sos
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
481
structure length
469
Chain Sequence
QMRLPSADVYRFAEPDSEENIIFEEGIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITKIIQRKKIAHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKYSYPLKSPGVRPSNPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Signaling protein
molecule keywords Transforming protein p21/H-RAS-1
publication title Structural evidence for feedback activation by RasGTP of the Ras-specific nucleotide exchange factor SOS
pubmed doi rcsb
source organism Homo sapiens
total genus 167
structure length 469
sequence length 481
ec nomenclature
pdb deposition date 2003-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF00617 RasGEF RasGEF domain
S PF00618 RasGEF_N RasGEF N-terminal motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.840.10 Mainly Alpha Orthogonal Bundle Son of Sevenless (SoS) protein; Chain S, domain 2 Ras guanine-nucleotide exchange factors catalytic domain 1nvvS02
1.20.870.10 Mainly Alpha Up-down Bundle Son of sevenless (SoS) protein; Chain S, domain 1 Son of sevenless (SoS) protein Chain: S domain 1 1nvvS01
4MH0E 4URYS 4URZS 1NVVS 3KSYA 1NVXS 4MGKE 3QXLA 4MGZE 4URXS 4F7ZA 5CM8A 2IJES 4JGWA 4URWS 1BKDS 3T6GA 1NVUS 4NYIS 4NYMS 1XD2C 4US0S 1XD4A 4URUS 4US1S 5CM9A 2II0A 4URVS 2BYVE 3CF6E 4MGIE 4NYJS 4MGYE 3T6AA 1NVWS 4L9MA 4US2S
chains in the Genus database with same CATH superfamily
4MH0E 4URYS 4URZS 1NVVS 3KSYA 1NVXS 4MGKE 3QXLA 4MGZE 4URXS 4F7ZA 5CM8A 2IJES 4JGWA 4URWS 1BKDS 3T6GA 1NVUS 4NYIS 4NYMS 1XD2C 4US0S 1XD4A 4URUS 4US1S 5CM9A 2II0A 4URVS 2BYVE 3CF6E 4MGIE 4NYJS 4MGYE 3T6AA 1NVWS 4L9MA 4US2S
chains in the Genus database with same CATH topology
4MH0E 4URYS 4URZS 1NVVS 3KSYA 1NVXS 4MGKE 3QXLA 4MGZE 4URXS 4F7ZA 5CM8A 2IJES 4JGWA 4URWS 1BKDS 3T6GA 1NVUS 4NYIS 4NYMS 1XD2C 4US0S 1XD4A 4URUS 4US1S 5CM9A 2II0A 4URVS 2BYVE 3CF6E 4MGIE 4NYJS 4MGYE 3T6AA 1NVWS 4L9MA 4US2S
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MH0 E;  4URY S;  4URZ S;  1NVV S;  3KSY A;  1NVX S;  4MGK E;  3QXL A;  4MGZ E;  4URX S;  4F7Z A;  5CM8 A;  2IJE S;  4JGW A;  4URW S;  1BKD S;  3T6G A;  1NVU S;  4NYI S;  4NYM S;  1XD2 C;  4US0 S;  1XD4 A;  4URU S;  4US1 S;  5CM9 A;  2II0 A;  4URV S;  2BYV E;  3CF6 E;  4MGI E;  4NYJ S;  4MGY E;  3T6A A;  1NVW S;  4L9M A;  4US2 S; 
#chains in the Genus database with same CATH topology
 4MH0 E;  4URY S;  4URZ S;  1NVV S;  3KSY A;  1NVX S;  4MGK E;  3QXL A;  4MGZ E;  4URX S;  4F7Z A;  5CM8 A;  2IJE S;  4JGW A;  4URW S;  1BKD S;  3T6G A;  1NVU S;  4NYI S;  4NYM S;  1XD2 C;  4US0 S;  1XD4 A;  4URU S;  4US1 S;  5CM9 A;  2II0 A;  4URV S;  2BYV E;  3CF6 E;  4MGI E;  4NYJ S;  4MGY E;  3T6A A;  1NVW S;  4L9M A;  4US2 S; 
#chains in the Genus database with same CATH homology
 4MH0 E;  4URY S;  4URZ S;  1NVV S;  3KSY A;  1NVX S;  4MGK E;  3QXL A;  4MGZ E;  4URX S;  4F7Z A;  5CM8 A;  2IJE S;  4JGW A;  4URW S;  1BKD S;  3T6G A;  1NVU S;  4NYI S;  4NYM S;  1XD2 C;  4US0 S;  1XD4 A;  4URU S;  4US1 S;  5CM9 A;  2II0 A;  4URV S;  2BYV E;  3CF6 E;  4MGI E;  4NYJ S;  4MGY E;  3T6A A;  1NVW S;  4L9M A;  4US2 S; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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