2II0A

Crystal structure of catalytic domain of son of sevenless (rem-cdc25) in the absence of ras
Total Genus 170
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
170
sequence length
480
structure length
463
Chain Sequence
QMRLPSADVYRFAEPDSEENIIFEGIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITKIIQRKKIAFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKYSYPLKSPGVRPSNP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Signaling protein
molecule keywords Son of sevenless homolog 1
publication title A Ras-induced conformational switch in the Ras activator Son of sevenless.
pubmed doi rcsb
source organism Homo sapiens
total genus 170
structure length 463
sequence length 480
ec nomenclature
pdb deposition date 2006-09-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00617 RasGEF RasGEF domain
A PF00618 RasGEF_N RasGEF N-terminal motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.840.10 Mainly Alpha Orthogonal Bundle Son of Sevenless (SoS) protein; Chain S, domain 2 Ras guanine-nucleotide exchange factors catalytic domain 2ii0A02
1.20.870.10 Mainly Alpha Up-down Bundle Son of sevenless (SoS) protein; Chain S, domain 1 Son of sevenless (SoS) protein Chain: S domain 1 2ii0A01
4NYJS 1NVXS 4L9MA 3T6AA 4MGIE 3KSYA 4URYS 4URUS 4MGZE 1NVUS 5CM9A 2BYVE 1BKDS 2IJES 2II0A 4MGKE 4NYMS 4URZS 4URWS 4MGYE 4URXS 4US1S 4F7ZA 5CM8A 4US2S 4NYIS 3T6GA 1NVVS 4US0S 1XD4A 4URVS 4JGWA 1NVWS 1XD2C 4MH0E 3CF6E 3QXLA
chains in the Genus database with same CATH superfamily
4NYJS 1NVXS 4L9MA 3T6AA 4MGIE 3KSYA 4URYS 4URUS 4MGZE 1NVUS 5CM9A 2BYVE 1BKDS 2IJES 2II0A 4MGKE 4NYMS 4URZS 4URWS 4MGYE 4URXS 4US1S 4F7ZA 5CM8A 4US2S 4NYIS 3T6GA 1NVVS 4US0S 1XD4A 4URVS 4JGWA 1NVWS 1XD2C 4MH0E 3CF6E 3QXLA
chains in the Genus database with same CATH topology
4NYJS 1NVXS 4L9MA 3T6AA 4MGIE 3KSYA 4URYS 4URUS 4MGZE 1NVUS 5CM9A 2BYVE 1BKDS 2IJES 2II0A 4MGKE 4NYMS 4URZS 4URWS 4MGYE 4URXS 4US1S 4F7ZA 5CM8A 4US2S 4NYIS 3T6GA 1NVVS 4US0S 1XD4A 4URVS 4JGWA 1NVWS 1XD2C 4MH0E 3CF6E 3QXLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NYJ S;  1NVX S;  4L9M A;  3T6A A;  4MGI E;  3KSY A;  4URY S;  4URU S;  4MGZ E;  1NVU S;  5CM9 A;  2BYV E;  1BKD S;  2IJE S;  2II0 A;  4MGK E;  4NYM S;  4URZ S;  4URW S;  4MGY E;  4URX S;  4US1 S;  4F7Z A;  5CM8 A;  4US2 S;  4NYI S;  3T6G A;  1NVV S;  4US0 S;  1XD4 A;  4URV S;  4JGW A;  1NVW S;  1XD2 C;  4MH0 E;  3CF6 E;  3QXL A; 
#chains in the Genus database with same CATH topology
 4NYJ S;  1NVX S;  4L9M A;  3T6A A;  4MGI E;  3KSY A;  4URY S;  4URU S;  4MGZ E;  1NVU S;  5CM9 A;  2BYV E;  1BKD S;  2IJE S;  2II0 A;  4MGK E;  4NYM S;  4URZ S;  4URW S;  4MGY E;  4URX S;  4US1 S;  4F7Z A;  5CM8 A;  4US2 S;  4NYI S;  3T6G A;  1NVV S;  4US0 S;  1XD4 A;  4URV S;  4JGW A;  1NVW S;  1XD2 C;  4MH0 E;  3CF6 E;  3QXL A; 
#chains in the Genus database with same CATH homology
 4NYJ S;  1NVX S;  4L9M A;  3T6A A;  4MGI E;  3KSY A;  4URY S;  4URU S;  4MGZ E;  1NVU S;  5CM9 A;  2BYV E;  1BKD S;  2IJE S;  2II0 A;  4MGK E;  4NYM S;  4URZ S;  4URW S;  4MGY E;  4URX S;  4US1 S;  4F7Z A;  5CM8 A;  4US2 S;  4NYI S;  3T6G A;  1NVV S;  4US0 S;  1XD4 A;  4URV S;  4JGW A;  1NVW S;  1XD2 C;  4MH0 E;  3CF6 E;  3QXL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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