1OOY | Genus

Total Genus 144

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	144
sequence length	481
structure length	463
Chain Sequence	TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIERNVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 463 atoms

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463 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transferase
source organism	Sus scrofa
publication title	Structure of the CoA transferase from pig heart to 1.7 A resolution. pubmed doi rcsb
molecule keywords	Succinyl-CoA:3-ketoacid-coenzyme A transferase, mitochondria
total genus	144
structure length	463
sequence length	481
chains with identical sequence	B
ec nomenclature	ec 2.8.3.5: 3-oxoacid CoA-transferase.
pdb deposition date	2003-03-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01144	CoA_trans	Coenzyme A transferase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	1ooyA01
3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	1ooyA02

3CDKB 1M3EA 2AHVA 1POIB 3GK7A 3EH7A 3RRLA 1XR4A 5DBNA 3OXOA 3QDQA 2NRBA 5DBNB 3RRLB 2AHWA 2HJ0A 3DLXA 2OASA 1OOYA 2NRCA 3K6MA 3D3UA 1K6DA 1OPEA 3CDKA 1OOZA 1POIA 2AHUA 1O9LA 4KGBA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3CDK B;  1M3E A;  2AHV A;  1POI B;  3GK7 A;  3EH7 A;  3RRL A;  1XR4 A;  5DBN A;  3OXO A;  3QDQ A;  2NRB A;  5DBN B;  3RRL B;  2AHW A;  2HJ0 A;  3DLX A;  2OAS A;  1OOY A;  2NRC A;  3K6M A;  3D3U A;  1K6D A;  1OPE A;  3CDK A;  1OOZ A;  1POI A;  2AHU A;  1O9L A;  4KGB A; 
#chains in the Genus database with same CATH topology
 3CDK B;  1M3E A;  2AHV A;  1POI B;  3GK7 A;  3EH7 A;  3RRL A;  1XR4 A;  5DBN A;  3OXO A;  3QDQ A;  2NRB A;  5DBN B;  3RRL B;  2AHW A;  2HJ0 A;  3DLX A;  2OAS A;  1OOY A;  2NRC A;  3K6M A;  3D3U A;  1K6D A;  1OPE A;  3CDK A;  1OOZ A;  1POI A;  2AHU A;  1O9L A;  4KGB A; 
#chains in the Genus database with same CATH homology
 3CDK B;  1M3E A;  2AHV A;  1POI B;  3GK7 A;  3EH7 A;  3RRL A;  1XR4 A;  5DBN A;  3OXO A;  3QDQ A;  2NRB A;  5DBN B;  3RRL B;  2AHW A;  2HJ0 A;  3DLX A;  2OAS A;  1OOY A;  2NRC A;  3K6M A;  3D3U A;  1K6D A;  1OPE A;  3CDK A;  1OOZ A;  1POI A;  2AHU A;  1O9L A;  4KGB A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1OOYA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations