1OOZ | Genus

Total Genus 150

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	150
sequence length	475
structure length	463
Chain Sequence	TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIERLSVRDNVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transferase
source organism	Sus scrofa
publication title	Structure of the CoA transferase from pig heart to 1.7 A resolution. pubmed doi rcsb
molecule keywords	Succinyl-CoA:3-ketoacid-coenzyme A transferase
total genus	150
structure length	463
sequence length	475
chains with identical sequence	B
ec nomenclature	ec 2.8.3.5: 3-oxoacid CoA-transferase.
pdb deposition date	2003-03-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01144	CoA_trans	Coenzyme A transferase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	1oozA01
3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	1oozA02

1XR4A 1K6DA 2AHWA 2HJ0A 1O9LA 3DLXA 3QDQA 2NRBA 2OASA 3RRLA 5DBNA 1OOZA 2AHUA 2AHVA 3CDKA 3D3UA 3GK7A 1M3EA 1POIA 3RRLB 2NRCA 5DBNB 1OOYA 3OXOA 3CDKB 1OPEA 1POIB 3K6MA 3EH7A 4KGBA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1XR4 A;  1K6D A;  2AHW A;  2HJ0 A;  1O9L A;  3DLX A;  3QDQ A;  2NRB A;  2OAS A;  3RRL A;  5DBN A;  1OOZ A;  2AHU A;  2AHV A;  3CDK A;  3D3U A;  3GK7 A;  1M3E A;  1POI A;  3RRL B;  2NRC A;  5DBN B;  1OOY A;  3OXO A;  3CDK B;  1OPE A;  1POI B;  3K6M A;  3EH7 A;  4KGB A; 
#chains in the Genus database with same CATH topology
 1XR4 A;  1K6D A;  2AHW A;  2HJ0 A;  1O9L A;  3DLX A;  3QDQ A;  2NRB A;  2OAS A;  3RRL A;  5DBN A;  1OOZ A;  2AHU A;  2AHV A;  3CDK A;  3D3U A;  3GK7 A;  1M3E A;  1POI A;  3RRL B;  2NRC A;  5DBN B;  1OOY A;  3OXO A;  3CDK B;  1OPE A;  1POI B;  3K6M A;  3EH7 A;  4KGB A; 
#chains in the Genus database with same CATH homology
 1XR4 A;  1K6D A;  2AHW A;  2HJ0 A;  1O9L A;  3DLX A;  3QDQ A;  2NRB A;  2OAS A;  3RRL A;  5DBN A;  1OOZ A;  2AHU A;  2AHV A;  3CDK A;  3D3U A;  3GK7 A;  1M3E A;  1POI A;  3RRL B;  2NRC A;  5DBN B;  1OOY A;  3OXO A;  3CDK B;  1OPE A;  1POI B;  3K6M A;  3EH7 A;  4KGB A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1OOZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations