1OPEA

Deletion mutant of succinyl-coa:3-ketoacid coa transferase from pig heart
Total Genus 139
50100150200250300350400450020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
139
sequence length
475
structure length
453
Chain Sequence
TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIERLSVRVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIVKGMGGAMDLVSSAKTKVVVTMEHSAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
source organism Sus scrofa
publication title Structure of the CoA transferase from pig heart to 1.7 A resolution.
pubmed doi rcsb
molecule keywords Succinyl-CoA:3-ketoacid-coenzyme A transferase
total genus 139
structure length 453
sequence length 475
chains with identical sequence B
ec nomenclature ec 2.8.3.5: 3-oxoacid CoA-transferase.
pdb deposition date 2003-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 1opeA01
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 1opeA02
3EH7A 2AHUA 1OOZA 3CDKB 3OXOA 4KGBA 1POIA 1O9LA 5DBNB 1M3EA 3DLXA 1K6DA 1OPEA 3D3UA 3CDKA 3K6MA 2NRBA 5DBNA 1XR4A 3RRLB 2AHWA 2AHVA 2HJ0A 3GK7A 2NRCA 3QDQA 1POIB 1OOYA 3RRLA 2OASA
chains in the Genus database with same CATH superfamily
3EH7A 2AHUA 1OOZA 3CDKB 3OXOA 4KGBA 1POIA 1O9LA 5DBNB 1M3EA 3DLXA 1K6DA 1OPEA 3D3UA 3CDKA 3K6MA 2NRBA 5DBNA 1XR4A 3RRLB 2AHWA 2AHVA 2HJ0A 3GK7A 2NRCA 3QDQA 1POIB 1OOYA 3RRLA 2OASA
chains in the Genus database with same CATH topology
3EH7A 2AHUA 1OOZA 3CDKB 3OXOA 4KGBA 1POIA 1O9LA 5DBNB 1M3EA 3DLXA 1K6DA 1OPEA 3D3UA 3CDKA 3K6MA 2NRBA 5DBNA 1XR4A 3RRLB 2AHWA 2AHVA 2HJ0A 3GK7A 2NRCA 3QDQA 1POIB 1OOYA 3RRLA 2OASA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EH7 A;  2AHU A;  1OOZ A;  3CDK B;  3OXO A;  4KGB A;  1POI A;  1O9L A;  5DBN B;  1M3E A;  3DLX A;  1K6D A;  1OPE A;  3D3U A;  3CDK A;  3K6M A;  2NRB A;  5DBN A;  1XR4 A;  3RRL B;  2AHW A;  2AHV A;  2HJ0 A;  3GK7 A;  2NRC A;  3QDQ A;  1POI B;  1OOY A;  3RRL A;  2OAS A; 
#chains in the Genus database with same CATH topology
 3EH7 A;  2AHU A;  1OOZ A;  3CDK B;  3OXO A;  4KGB A;  1POI A;  1O9L A;  5DBN B;  1M3E A;  3DLX A;  1K6D A;  1OPE A;  3D3U A;  3CDK A;  3K6M A;  2NRB A;  5DBN A;  1XR4 A;  3RRL B;  2AHW A;  2AHV A;  2HJ0 A;  3GK7 A;  2NRC A;  3QDQ A;  1POI B;  1OOY A;  3RRL A;  2OAS A; 
#chains in the Genus database with same CATH homology
 3EH7 A;  2AHU A;  1OOZ A;  3CDK B;  3OXO A;  4KGB A;  1POI A;  1O9L A;  5DBN B;  1M3E A;  3DLX A;  1K6D A;  1OPE A;  3D3U A;  3CDK A;  3K6M A;  2NRB A;  5DBN A;  1XR4 A;  3RRL B;  2AHW A;  2AHV A;  2HJ0 A;  3GK7 A;  2NRC A;  3QDQ A;  1POI B;  1OOY A;  3RRL A;  2OAS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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