1POIB

Crystal structure of glutaconate coenzyme a-transferase from acidaminococcus fermentans to 2.55 angstoms resolution
Total Genus 77

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
260
structure length
260
Chain Sequence
DYTNYTNKEMQAVTIAKQIKNGQVVTVGTGLPLIGASVAKRVYAPDCHIIVESGLMDCSPVEVPRSVGDLRFMAHCGCIWPNVRFVGFEINEYLHKANRLIAFIGGAQIDPYGNVNSTSIGDYHHPKTRFTGSGGANGIATYSNTIIMMQHEKRRFMNKIDYVTSPGWIDGPGGRERLGLPGDVGPQLVVTDKGILKFDEKTKRMYLAAYYPTSSPEDVLENTGFDLDVSKAVELEAPDPAVIKLIREEIDPGQAFIQVP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI10 (253-256)TI11 (256-259)AH1 (9-19)AH8 (242-251)TII1 (22-25)TVIII1 (44-47)S2 (50-53)S1 (26-28)S5 (102-106)TIV2 (62-65)TIV3 (66-69)S3 (57-60)TI2 (53-56)AH3 (72-76)TIV4 (68-71)AH4 (84-97)S4 (78-81)TI5 (183-186)AH5 (137-144)S10 (147-151)TVIII4 (159-162)S6 (110-111)TI8 (202-205)TI3 (112-115)TIV7 (168-171)TIV6 (162-165)S7 (117-118)TIV5 (118-121)S9 (127-131)S8 (121-124)TII2 (173-176)O1 (152-154)AH7 (218-224)TVIII5 (165-168)AH6 (176-180)TIV8 (170-173)S11 (188-193)S12 (196-200)TI6 (193-196)TI7 (201-204)S13 (207-212)S14 (235-236)TI9 (213-216)TIV11 (251-254)TI1 (46-49)AH2 (32-44)3H1 (155-157)TIV9 (230-233)Updating...
connected with : NaN
molecule tags Transferase
source organism Acidaminococcus fermentans
publication title Glutaconate CoA-transferase from Acidaminococcus fermentans: the crystal structure reveals homology with other CoA-transferases.
pubmed doi rcsb
molecule keywords GLUTACONATE COENZYME A-TRANSFERASE
total genus 77
structure length 260
sequence length 260
chains with identical sequence D
ec nomenclature ec 2.8.3.12: Glutaconate CoA-transferase.
pdb deposition date 1997-01-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 1poiB00
2HJ0A 1K6DA 2NRBA 2AHWA 3D3UA 3RRLB 3RRLA 2AHVA 3QDQA 1O9LA 4KGBA 3DLXA 3CDKB 3CDKA 1XR4A 3K6MA 3GK7A 5DBNA 5DBNB 1M3EA 2OASA 3EH7A 3OXOA 1OOZA 1OOYA 1POIB 2AHUA 1POIA 1OPEA 2NRCA
chains in the Genus database with same CATH superfamily
2HJ0A 1K6DA 2NRBA 2AHWA 3D3UA 3RRLB 3RRLA 2AHVA 3QDQA 1O9LA 4KGBA 3DLXA 3CDKB 3CDKA 1XR4A 3K6MA 3GK7A 5DBNA 5DBNB 1M3EA 2OASA 3EH7A 3OXOA 1OOZA 1OOYA 1POIB 2AHUA 1POIA 1OPEA 2NRCA
chains in the Genus database with same CATH topology
2HJ0A 1K6DA 2NRBA 2AHWA 3D3UA 3RRLB 3RRLA 2AHVA 3QDQA 1O9LA 4KGBA 3DLXA 3CDKB 3CDKA 1XR4A 3K6MA 3GK7A 5DBNA 5DBNB 1M3EA 2OASA 3EH7A 3OXOA 1OOZA 1OOYA 1POIB 2AHUA 1POIA 1OPEA 2NRCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HJ0 A;  1K6D A;  2NRB A;  2AHW A;  3D3U A;  3RRL B;  3RRL A;  2AHV A;  3QDQ A;  1O9L A;  4KGB A;  3DLX A;  3CDK B;  3CDK A;  1XR4 A;  3K6M A;  3GK7 A;  5DBN A;  5DBN B;  1M3E A;  2OAS A;  3EH7 A;  3OXO A;  1OOZ A;  1OOY A;  1POI B;  2AHU A;  1POI A;  1OPE A;  2NRC A; 
#chains in the Genus database with same CATH topology
 2HJ0 A;  1K6D A;  2NRB A;  2AHW A;  3D3U A;  3RRL B;  3RRL A;  2AHV A;  3QDQ A;  1O9L A;  4KGB A;  3DLX A;  3CDK B;  3CDK A;  1XR4 A;  3K6M A;  3GK7 A;  5DBN A;  5DBN B;  1M3E A;  2OAS A;  3EH7 A;  3OXO A;  1OOZ A;  1OOY A;  1POI B;  2AHU A;  1POI A;  1OPE A;  2NRC A; 
#chains in the Genus database with same CATH homology
 2HJ0 A;  1K6D A;  2NRB A;  2AHW A;  3D3U A;  3RRL B;  3RRL A;  2AHV A;  3QDQ A;  1O9L A;  4KGB A;  3DLX A;  3CDK B;  3CDK A;  1XR4 A;  3K6M A;  3GK7 A;  5DBN A;  5DBN B;  1M3E A;  2OAS A;  3EH7 A;  3OXO A;  1OOZ A;  1OOY A;  1POI B;  2AHU A;  1POI A;  1OPE A;  2NRC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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