1SI8A

Crystal structure of e. faecalis catalase
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
474
structure length
474
Chain Sequence
QHLTTSQGSPVGDNQNSLTAGEFGPVLIQDVHLLEKLAHFNRERVPERVVHAKGAGAHGIFKVSQSMAQYTKADFLSEVGKETPLFARFSTVAGELGSSDTLRDPRGFALKFYTDEGNYDLVGNNTPIFFIRDAIKFPDFIHSQKRNPRTHLKSPEAVWDFWSHSPESLHQVTILMSDRGIPLSFRHMHGFGSHTFKWVNAAGEVFFVKYHFKTNQGIKNLESQLAEEIAGKNPDFHIEDLHNAIENQEFPSWTLSVQIIPYADALTMKETLFDVTKTVSQKEYPLIEVGTMTLNRNPENYFAEVEQVTFSPGNFVPGIEASPDKLLQGRLFAYGDAHRHRVGANSHQLPINQAKAPVNNYQKDGNMRFNNGNSEINYEPNSYTETPKEDPTAKISSFEVEGNVGNYSYNQDHFTQANALYNLLPSEEKENLINNIAASLGQVKNQEIIARQIDLFTRVNPEYGARVAQAIKQQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The three-dimensional structure of catalase from Enterococcus faecalis.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Enterococcus faecalis
molecule keywords Catalase
total genus 151
structure length 474
sequence length 474
chains with identical sequence B, C, D
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2004-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 1si8A00
4AULA 2CAHA 4E37A 4CABA 2XQ1A 1E93A 4ENVA 1NM0A 1QWLA 4BFLA 1IPHA 4BIMA 4QOPA 1H7KA 1M7SA 1P7YA 1P80A 3ZJ5A 3TTXA 4AUEA 1CF9A 2ISAA 2XF2A 3VU3A 1QWMA 2A9EA 3PQ5A 4B31A 3PQ6A 4QOMA 1SI8A 2IUFA 3ZJ4A 5BV2P 1GGKA 1QWSA 3P9SA 1GWFA 4B40A 3P9RA 2IQFA 4AJ9A 4AUMA 3TTUA 1GWHA 1P81A 4B5KA 1GGEA 3PQ3A 1GWEA 1MQFA 1M85A 3TTVA 4ENPA 1A4EA 4QOLA 3EJ6A 3HB6A 3DY5A 1H6NA 3PQ7A 1GGHA 3PQ4A 3PQ2A 4QORA 3TTWA 4ENUA 4QOQA 2J2MA 1GG9A 2CAGA 4QOOA 3P9PA 1GGFA 1HBZA 4ENQA 4ENSA 4ENRA 3TTTA 1U5UA 4AUNA 1P7ZA 4ENWA 4QONA 1GGJA 1SY7A 4B2YA 4B7AA 4ENTA 3P9QA 3PQ8A 1F4JA 1QF7A
chains in the Genus database with same CATH superfamily
3NWLA 4AULA 2CAHA 7CATA 4E37A 4CABA 2XQ1A 1E93A 4B7GA 4ENVA 1NM0A 1QWLA 4BFLA 1IPHA 4BIMA 4QOPA 1H7KA 1M7SA 1P7YA 3RGPA 1DGGA 1P80A 3ZJ5A 3TTXA 4AUEA 1CF9A 1TH2A 2ISAA 2XF2A 3RE8A 3VU3A 1QWMA 2A9EA 4BLCA 3PQ5A 4B31A 3PQ6A 4QOMA 1SI8A 2IUFA 3ZJ4A 5BV2P 1GGKA 1QWSA 1DGHA 3P9SA 1GWFA 4B40A 3P9RA 2IQFA 4AJ9A 4AUMA 3TTUA 1GWHA 1P81A 4B5KA 1GGEA 3PQ3A 3J7BA 1GWEA 1MQFA 1M85A 1TGUA 3TTVA 4ENPA 1DGHB 1A4EA 4QOLA 3EJ6A 3HB6A 3DY5A 1QQWA 1H6NA 3PQ7A 1GGHA 3PQ4A 3E4YA 4B7HA 3PQ2A 4QORA 3TTWA 4ENUA 1DGFA 4QOQA 2J2MA 1GG9A 2CAGA 3E4WA 4QOOA 3P9PA 1GGFA 1HBZA 4ENQA 4ENSA 4ENRA 3TTTA 1U5UA 4AUNA 1P7ZA 4ENWA 4QONA 3RGSA 1TH3A 5GKNA 1GGJA 1SY7A 4B2YA 4B7AA 4B7FA 4ENTA 3P9QA 3PQ8A 1F4JA 1DGBA 1QF7A 8CATA 1TH4A
chains in the Genus database with same CATH topology
4AULA 2CAHA 4E37A 4CABA 2XQ1A 1E93A 4ENVA 1NM0A 1QWLA 4BFLA 1IPHA 4BIMA 4QOPA 1H7KA 1M7SA 1P7YA 1P80A 3ZJ5A 3TTXA 4AUEA 1CF9A 2ISAA 2XF2A 3VU3A 1QWMA 2A9EA 3PQ5A 4B31A 3PQ6A 4QOMA 1SI8A 2IUFA 3ZJ4A 5BV2P 1GGKA 1QWSA 3P9SA 1GWFA 4B40A 3P9RA 2IQFA 4AJ9A 4AUMA 3TTUA 1GWHA 1P81A 4B5KA 1GGEA 3PQ3A 1GWEA 1MQFA 1M85A 3TTVA 4ENPA 1A4EA 4QOLA 3EJ6A 3HB6A 3DY5A 1H6NA 3PQ7A 1GGHA 3PQ4A 3PQ2A 4QORA 3TTWA 4ENUA 4QOQA 2J2MA 1GG9A 2CAGA 4QOOA 3P9PA 1GGFA 1HBZA 4ENQA 4ENSA 4ENRA 3TTTA 1U5UA 4AUNA 1P7ZA 4ENWA 4QONA 1GGJA 1SY7A 4B2YA 4B7AA 4ENTA 3P9QA 3PQ8A 1F4JA 1QF7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AUL A;  2CAH A;  4E37 A;  4CAB A;  2XQ1 A;  1E93 A;  4ENV A;  1NM0 A;  1QWL A;  4BFL A;  1IPH A;  4BIM A;  4QOP A;  1H7K A;  1M7S A;  1P7Y A;  1P80 A;  3ZJ5 A;  3TTX A;  4AUE A;  1CF9 A;  2ISA A;  2XF2 A;  3VU3 A;  1QWM A;  2A9E A;  3PQ5 A;  4B31 A;  3PQ6 A;  4QOM A;  1SI8 A;  2IUF A;  3ZJ4 A;  5BV2 P;  1GGK A;  1QWS A;  3P9S A;  1GWF A;  4B40 A;  3P9R A;  2IQF A;  4AJ9 A;  4AUM A;  3TTU A;  1GWH A;  1P81 A;  4B5K A;  1GGE A;  3PQ3 A;  1GWE A;  1MQF A;  1M85 A;  3TTV A;  4ENP A;  1A4E A;  4QOL A;  3EJ6 A;  3HB6 A;  3DY5 A;  1H6N A;  3PQ7 A;  1GGH A;  3PQ4 A;  3PQ2 A;  4QOR A;  3TTW A;  4ENU A;  4QOQ A;  2J2M A;  1GG9 A;  2CAG A;  4QOO A;  3P9P A;  1GGF A;  1HBZ A;  4ENQ A;  4ENS A;  4ENR A;  3TTT A;  1U5U A;  4AUN A;  1P7Z A;  4ENW A;  4QON A;  1GGJ A;  1SY7 A;  4B2Y A;  4B7A A;  4ENT A;  3P9Q A;  3PQ8 A;  1F4J A;  1QF7 A; 
#chains in the Genus database with same CATH topology
 3NWL A;  4AUL A;  2CAH A;  7CAT A;  4E37 A;  4CAB A;  2XQ1 A;  1E93 A;  4B7G A;  4ENV A;  1NM0 A;  1QWL A;  4BFL A;  1IPH A;  4BIM A;  4QOP A;  1H7K A;  1M7S A;  1P7Y A;  3RGP A;  1DGG A;  1P80 A;  3ZJ5 A;  3TTX A;  4AUE A;  1CF9 A;  1TH2 A;  2ISA A;  2XF2 A;  3RE8 A;  3VU3 A;  1QWM A;  2A9E A;  4BLC A;  3PQ5 A;  4B31 A;  3PQ6 A;  4QOM A;  1SI8 A;  2IUF A;  3ZJ4 A;  5BV2 P;  1GGK A;  1QWS A;  1DGH A;  3P9S A;  1GWF A;  4B40 A;  3P9R A;  2IQF A;  4AJ9 A;  4AUM A;  3TTU A;  1GWH A;  1P81 A;  4B5K A;  1GGE A;  3PQ3 A;  3J7B A;  1GWE A;  1MQF A;  1M85 A;  1TGU A;  3TTV A;  4ENP A;  1DGH B;  1A4E A;  4QOL A;  3EJ6 A;  3HB6 A;  3DY5 A;  1QQW A;  1H6N A;  3PQ7 A;  1GGH A;  3PQ4 A;  3E4Y A;  4B7H A;  3PQ2 A;  4QOR A;  3TTW A;  4ENU A;  1DGF A;  4QOQ A;  2J2M A;  1GG9 A;  2CAG A;  3E4W A;  4QOO A;  3P9P A;  1GGF A;  1HBZ A;  4ENQ A;  4ENS A;  4ENR A;  3TTT A;  1U5U A;  4AUN A;  1P7Z A;  4ENW A;  4QON A;  3RGS A;  1TH3 A;  5GKN A;  1GGJ A;  1SY7 A;  4B2Y A;  4B7A A;  4B7F A;  4ENT A;  3P9Q A;  3PQ8 A;  1F4J A;  1DGB A;  1QF7 A;  8CAT A;  1TH4 A; 
#chains in the Genus database with same CATH homology
 4AUL A;  2CAH A;  4E37 A;  4CAB A;  2XQ1 A;  1E93 A;  4ENV A;  1NM0 A;  1QWL A;  4BFL A;  1IPH A;  4BIM A;  4QOP A;  1H7K A;  1M7S A;  1P7Y A;  1P80 A;  3ZJ5 A;  3TTX A;  4AUE A;  1CF9 A;  2ISA A;  2XF2 A;  3VU3 A;  1QWM A;  2A9E A;  3PQ5 A;  4B31 A;  3PQ6 A;  4QOM A;  1SI8 A;  2IUF A;  3ZJ4 A;  5BV2 P;  1GGK A;  1QWS A;  3P9S A;  1GWF A;  4B40 A;  3P9R A;  2IQF A;  4AJ9 A;  4AUM A;  3TTU A;  1GWH A;  1P81 A;  4B5K A;  1GGE A;  3PQ3 A;  1GWE A;  1MQF A;  1M85 A;  3TTV A;  4ENP A;  1A4E A;  4QOL A;  3EJ6 A;  3HB6 A;  3DY5 A;  1H6N A;  3PQ7 A;  1GGH A;  3PQ4 A;  3PQ2 A;  4QOR A;  3TTW A;  4ENU A;  4QOQ A;  2J2M A;  1GG9 A;  2CAG A;  4QOO A;  3P9P A;  1GGF A;  1HBZ A;  4ENQ A;  4ENS A;  4ENR A;  3TTT A;  1U5U A;  4AUN A;  1P7Z A;  4ENW A;  4QON A;  1GGJ A;  1SY7 A;  4B2Y A;  4B7A A;  4ENT A;  3P9Q A;  3PQ8 A;  1F4J A;  1QF7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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