1SP3A

Crystal structure of octaheme cytochrome c from shewanella oneidensis
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
442
structure length
436
Chain Sequence
ANPHKDVLKGPFTTGSEVTTQCLTCHEEQATDMMKTSHWTWELEQKLPDRTVVRGKKNSINNFCVAISSNEPRCTSCHAGYGWKDNTFDFKDKTKVDCLICHDTTGTYVKDPAGAGEPMAKLDLAKIAQNVGAPVRDNCGSCHFYGKHGDLDSSMAYPDKATDVHMDSDGNNFQCQNCHTTEKHQISGNAMGVSPGGIDHIGCENCHDSAPHSNKKLNTHTATVACQTCHIPFFAKNEPTKMQWDWSTAGDDKPETVDQYGKHTYQKKKGNFVWEKMVKPQYAWYNGTANAYMAGDKMDSNVVTKLTYPMGDINDAKAKIYPFKVHTGKQIYDKKLNIFITPKTYGKGGYWSEFDWNLAAKLGMEANPTMLEKGIKYSGEYDFAATEMWWRINHMVSPKEQALNCNDCHNKGTRLDWQALGYQGDPMKNKQGPKHK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Octaheme tetrathionate reductase is a respiratory enzyme with novel heme ligation.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Shewanella oneidensis
molecule keywords cytochrome c, putative
total genus 111
structure length 436
sequence length 442
ec nomenclature
pdb deposition date 2004-03-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11783 Cytochrome_cB Cytochrome c bacterial
A PF13435 Cytochrome_C554 Cytochrome c554 and c-prime
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1130.10 Mainly Alpha Orthogonal Bundle Flavocytochrome C3; Chain A, domain 2 Flavocytochrome C3; Chain A 1sp3A01
3D1IA 1M1QA 2VR0A 3L1TA 4Q1OA 3S7WA 3SCEA 1FS7A 1JRXA 1FT5A 3SXQA 3BNJA 3LG1A 1JRZA 1FS9A 1BVBA 1GU6A 1JNIA 3BNGA 3TORA 2E81A 4Q17A 1FS8A 1OAHA 1P2EA 2RF7A 1JRYA 1KSSA 2RDZA 3F29A 4Q5CA 1KSUA 2K3VA 4Q0TA 2E80A 4Q5BA 3UU9A 1D4CA 4WJYA 2ZO5A 2B7RA 4L3YA 3RKHA 3UBRA 1E39A 1M64A 1QO8A 1Y0PA 1M1RA 1P2HA 3OWMA 1D4DA 1FT6A 4L3ZA 2OT4A 1SP3A 1Q9IA 3GM6A 3LGQA 2J7AA 3BNHA 1LJ1A 3MMOA 1QDBA 4Q4UA 4L3XA 1M1PA 1D4EA 1QJDA 2B7SA 3TTBA 3BNFA 3FO3A 4L38A
chains in the Genus database with same CATH superfamily
3D1IA 1M1QA 2VR0A 3L1TA 4Q1OA 3S7WA 3SCEA 1FS7A 1JRXA 1FT5A 3SXQA 3BNJA 3LG1A 1JRZA 1FS9A 1BVBA 1GU6A 1JNIA 3BNGA 3TORA 2E81A 4Q17A 1FS8A 1OAHA 1P2EA 2RF7A 1JRYA 1KSSA 2RDZA 3F29A 4Q5CA 1KSUA 2K3VA 4Q0TA 2E80A 4Q5BA 3UU9A 1D4CA 4WJYA 2ZO5A 2B7RA 4L3YA 3RKHA 3UBRA 1E39A 1M64A 1QO8A 1Y0PA 1M1RA 1P2HA 3OWMA 1D4DA 1FT6A 4L3ZA 2OT4A 1SP3A 1Q9IA 3GM6A 3LGQA 2J7AA 3BNHA 1LJ1A 3MMOA 1QDBA 4Q4UA 4L3XA 2CZSA 1M1PA 1D4EA 1QJDA 2B7SA 3TTBA 3BNFA 3FO3A 4L38A
chains in the Genus database with same CATH topology
3D1IA 1M1QA 2VR0A 3L1TA 4Q1OA 3S7WA 3SCEA 1FS7A 1JRXA 1FT5A 3SXQA 3BNJA 3LG1A 1JRZA 1FS9A 1BVBA 1GU6A 1JNIA 3BNGA 3TORA 2E81A 4Q17A 1FS8A 1OAHA 1P2EA 2RF7A 1JRYA 1KSSA 2RDZA 3F29A 4Q5CA 1KSUA 2K3VA 4Q0TA 2E80A 4Q5BA 3UU9A 1D4CA 4WJYA 2ZO5A 2B7RA 4L3YA 3RKHA 3UBRA 1E39A 1M64A 1QO8A 1Y0PA 1M1RA 1P2HA 3OWMA 1D4DA 1FT6A 4L3ZA 2OT4A 1SP3A 1Q9IA 3GM6A 3LGQA 2J7AA 3BNHA 1LJ1A 3MMOA 1QDBA 4Q4UA 4L3XA 1M1PA 1D4EA 1QJDA 2B7SA 3TTBA 3BNFA 3FO3A 4L38A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D1I A;  1M1Q A;  2VR0 A;  3L1T A;  4Q1O A;  3S7W A;  3SCE A;  1FS7 A;  1JRX A;  1FT5 A;  3SXQ A;  3BNJ A;  3LG1 A;  1JRZ A;  1FS9 A;  1BVB A;  1GU6 A;  1JNI A;  3BNG A;  3TOR A;  2E81 A;  4Q17 A;  1FS8 A;  1OAH A;  1P2E A;  2RF7 A;  1JRY A;  1KSS A;  2RDZ A;  3F29 A;  4Q5C A;  1KSU A;  2K3V A;  4Q0T A;  2E80 A;  4Q5B A;  3UU9 A;  1D4C A;  4WJY A;  2ZO5 A;  2B7R A;  4L3Y A;  3RKH A;  3UBR A;  1E39 A;  1M64 A;  1QO8 A;  1Y0P A;  1M1R A;  1P2H A;  3OWM A;  1D4D A;  1FT6 A;  4L3Z A;  2OT4 A;  1SP3 A;  1Q9I A;  3GM6 A;  3LGQ A;  2J7A A;  3BNH A;  1LJ1 A;  3MMO A;  1QDB A;  4Q4U A;  4L3X A;  1M1P A;  1D4E A;  1QJD A;  2B7S A;  3TTB A;  3BNF A;  3FO3 A;  4L38 A; 
#chains in the Genus database with same CATH topology
 3D1I A;  1M1Q A;  2VR0 A;  3L1T A;  4Q1O A;  3S7W A;  3SCE A;  1FS7 A;  1JRX A;  1FT5 A;  3SXQ A;  3BNJ A;  3LG1 A;  1JRZ A;  1FS9 A;  1BVB A;  1GU6 A;  1JNI A;  3BNG A;  3TOR A;  2E81 A;  4Q17 A;  1FS8 A;  1OAH A;  1P2E A;  2RF7 A;  1JRY A;  1KSS A;  2RDZ A;  3F29 A;  4Q5C A;  1KSU A;  2K3V A;  4Q0T A;  2E80 A;  4Q5B A;  3UU9 A;  1D4C A;  4WJY A;  2ZO5 A;  2B7R A;  4L3Y A;  3RKH A;  3UBR A;  1E39 A;  1M64 A;  1QO8 A;  1Y0P A;  1M1R A;  1P2H A;  3OWM A;  1D4D A;  1FT6 A;  4L3Z A;  2OT4 A;  1SP3 A;  1Q9I A;  3GM6 A;  3LGQ A;  2J7A A;  3BNH A;  1LJ1 A;  3MMO A;  1QDB A;  4Q4U A;  4L3X A;  2CZS A;  1M1P A;  1D4E A;  1QJD A;  2B7S A;  3TTB A;  3BNF A;  3FO3 A;  4L38 A; 
#chains in the Genus database with same CATH homology
 3D1I A;  1M1Q A;  2VR0 A;  3L1T A;  4Q1O A;  3S7W A;  3SCE A;  1FS7 A;  1JRX A;  1FT5 A;  3SXQ A;  3BNJ A;  3LG1 A;  1JRZ A;  1FS9 A;  1BVB A;  1GU6 A;  1JNI A;  3BNG A;  3TOR A;  2E81 A;  4Q17 A;  1FS8 A;  1OAH A;  1P2E A;  2RF7 A;  1JRY A;  1KSS A;  2RDZ A;  3F29 A;  4Q5C A;  1KSU A;  2K3V A;  4Q0T A;  2E80 A;  4Q5B A;  3UU9 A;  1D4C A;  4WJY A;  2ZO5 A;  2B7R A;  4L3Y A;  3RKH A;  3UBR A;  1E39 A;  1M64 A;  1QO8 A;  1Y0P A;  1M1R A;  1P2H A;  3OWM A;  1D4D A;  1FT6 A;  4L3Z A;  2OT4 A;  1SP3 A;  1Q9I A;  3GM6 A;  3LGQ A;  2J7A A;  3BNH A;  1LJ1 A;  3MMO A;  1QDB A;  4Q4U A;  4L3X A;  1M1P A;  1D4E A;  1QJD A;  2B7S A;  3TTB A;  3BNF A;  3FO3 A;  4L38 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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