1SP3A

Crystal structure of octaheme cytochrome c from shewanella oneidensis
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
442
structure length
436
Chain Sequence
ANPHKDVLKGPFTTGSEVTTQCLTCHEEQATDMMKTSHWTWELEQKLPDRTVVRGKKNSINNFCVAISSNEPRCTSCHAGYGWKDNTFDFKDKTKVDCLICHDTTGTYVKDPAGAGEPMAKLDLAKIAQNVGAPVRDNCGSCHFYGKHGDLDSSMAYPDKATDVHMDSDGNNFQCQNCHTTEKHQISGNAMGVSPGGIDHIGCENCHDSAPHSNKKLNTHTATVACQTCHIPFFAKNEPTKMQWDWSTAGDDKPETVDQYGKHTYQKKKGNFVWEKMVKPQYAWYNGTANAYMAGDKMDSNVVTKLTYPMGDINDAKAKIYPFKVHTGKQIYDKKLNIFITPKTYGKGGYWSEFDWNLAAKLGMEANPTMLEKGIKYSGEYDFAATEMWWRINHMVSPKEQALNCNDCHNKGTRLDWQALGYQGDPMKNKQGPKHK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Octaheme tetrathionate reductase is a respiratory enzyme with novel heme ligation.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Shewanella oneidensis
molecule keywords cytochrome c, putative
total genus 111
structure length 436
sequence length 442
ec nomenclature
pdb deposition date 2004-03-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11783 Cytochrome_cB Cytochrome c bacterial
A PF13435 Cytochrome_C554 Cytochrome c554 and c-prime
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1130.10 Mainly Alpha Orthogonal Bundle Flavocytochrome C3; Chain A, domain 2 Flavocytochrome C3; Chain A 1sp3A01
3UU9A 4Q5BA 1E39A 1FS8A 1M1QA 3S7WA 4Q0TA 1BVBA 1P2HA 2ZO5A 1FS9A 1FT6A 1KSSA 2J7AA 4WJYA 3SCEA 3LG1A 2RF7A 3L1TA 1KSUA 1P2EA 4L3YA 3GM6A 2K3VA 4L3XA 1D4EA 1D4CA 1GU6A 1QJDA 2VR0A 3D1IA 3SXQA 4L3ZA 2OT4A 1D4DA 1QO8A 4Q5CA 3LGQA 1FT5A 1JNIA 1JRYA 4Q1OA 3TORA 3F29A 1M1RA 1M64A 1JRZA 3BNHA 3BNGA 2RDZA 1M1PA 4Q4UA 1OAHA 3TTBA 3UBRA 1LJ1A 2E80A 4L38A 3MMOA 1SP3A 4Q17A 2B7SA 3BNFA 3FO3A 2E81A 3BNJA 1Y0PA 1JRXA 1Q9IA 3OWMA 1QDBA 1FS7A 3RKHA 2B7RA
chains in the Genus database with same CATH superfamily
3UU9A 4Q5BA 1E39A 1FS8A 1M1QA 3S7WA 4Q0TA 1BVBA 1P2HA 2ZO5A 1FS9A 1FT6A 1KSSA 2J7AA 4WJYA 3SCEA 3LG1A 2CZSA 2RF7A 3L1TA 1KSUA 1P2EA 4L3YA 3GM6A 2K3VA 4L3XA 1D4EA 1D4CA 1GU6A 1QJDA 2VR0A 3D1IA 3SXQA 4L3ZA 2OT4A 1D4DA 1QO8A 4Q5CA 3LGQA 1FT5A 1JNIA 1JRYA 4Q1OA 3TORA 3F29A 1M1RA 1M64A 1JRZA 3BNHA 3BNGA 2RDZA 1M1PA 4Q4UA 1OAHA 3TTBA 3UBRA 1LJ1A 2E80A 4L38A 3MMOA 1SP3A 4Q17A 2B7SA 3BNFA 3FO3A 2E81A 3BNJA 1Y0PA 1JRXA 1Q9IA 3OWMA 1QDBA 1FS7A 3RKHA 2B7RA
chains in the Genus database with same CATH topology
3UU9A 4Q5BA 1E39A 1FS8A 1M1QA 3S7WA 4Q0TA 1BVBA 1P2HA 2ZO5A 1FS9A 1FT6A 1KSSA 2J7AA 4WJYA 3SCEA 3LG1A 2RF7A 3L1TA 1KSUA 1P2EA 4L3YA 3GM6A 2K3VA 4L3XA 1D4EA 1D4CA 1GU6A 1QJDA 2VR0A 3D1IA 3SXQA 4L3ZA 2OT4A 1D4DA 1QO8A 4Q5CA 3LGQA 1FT5A 1JNIA 1JRYA 4Q1OA 3TORA 3F29A 1M1RA 1M64A 1JRZA 3BNHA 3BNGA 2RDZA 1M1PA 4Q4UA 1OAHA 3TTBA 3UBRA 1LJ1A 2E80A 4L38A 3MMOA 1SP3A 4Q17A 2B7SA 3BNFA 3FO3A 2E81A 3BNJA 1Y0PA 1JRXA 1Q9IA 3OWMA 1QDBA 1FS7A 3RKHA 2B7RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UU9 A;  4Q5B A;  1E39 A;  1FS8 A;  1M1Q A;  3S7W A;  4Q0T A;  1BVB A;  1P2H A;  2ZO5 A;  1FS9 A;  1FT6 A;  1KSS A;  2J7A A;  4WJY A;  3SCE A;  3LG1 A;  2RF7 A;  3L1T A;  1KSU A;  1P2E A;  4L3Y A;  3GM6 A;  2K3V A;  4L3X A;  1D4E A;  1D4C A;  1GU6 A;  1QJD A;  2VR0 A;  3D1I A;  3SXQ A;  4L3Z A;  2OT4 A;  1D4D A;  1QO8 A;  4Q5C A;  3LGQ A;  1FT5 A;  1JNI A;  1JRY A;  4Q1O A;  3TOR A;  3F29 A;  1M1R A;  1M64 A;  1JRZ A;  3BNH A;  3BNG A;  2RDZ A;  1M1P A;  4Q4U A;  1OAH A;  3TTB A;  3UBR A;  1LJ1 A;  2E80 A;  4L38 A;  3MMO A;  1SP3 A;  4Q17 A;  2B7S A;  3BNF A;  3FO3 A;  2E81 A;  3BNJ A;  1Y0P A;  1JRX A;  1Q9I A;  3OWM A;  1QDB A;  1FS7 A;  3RKH A;  2B7R A; 
#chains in the Genus database with same CATH topology
 3UU9 A;  4Q5B A;  1E39 A;  1FS8 A;  1M1Q A;  3S7W A;  4Q0T A;  1BVB A;  1P2H A;  2ZO5 A;  1FS9 A;  1FT6 A;  1KSS A;  2J7A A;  4WJY A;  3SCE A;  3LG1 A;  2CZS A;  2RF7 A;  3L1T A;  1KSU A;  1P2E A;  4L3Y A;  3GM6 A;  2K3V A;  4L3X A;  1D4E A;  1D4C A;  1GU6 A;  1QJD A;  2VR0 A;  3D1I A;  3SXQ A;  4L3Z A;  2OT4 A;  1D4D A;  1QO8 A;  4Q5C A;  3LGQ A;  1FT5 A;  1JNI A;  1JRY A;  4Q1O A;  3TOR A;  3F29 A;  1M1R A;  1M64 A;  1JRZ A;  3BNH A;  3BNG A;  2RDZ A;  1M1P A;  4Q4U A;  1OAH A;  3TTB A;  3UBR A;  1LJ1 A;  2E80 A;  4L38 A;  3MMO A;  1SP3 A;  4Q17 A;  2B7S A;  3BNF A;  3FO3 A;  2E81 A;  3BNJ A;  1Y0P A;  1JRX A;  1Q9I A;  3OWM A;  1QDB A;  1FS7 A;  3RKH A;  2B7R A; 
#chains in the Genus database with same CATH homology
 3UU9 A;  4Q5B A;  1E39 A;  1FS8 A;  1M1Q A;  3S7W A;  4Q0T A;  1BVB A;  1P2H A;  2ZO5 A;  1FS9 A;  1FT6 A;  1KSS A;  2J7A A;  4WJY A;  3SCE A;  3LG1 A;  2RF7 A;  3L1T A;  1KSU A;  1P2E A;  4L3Y A;  3GM6 A;  2K3V A;  4L3X A;  1D4E A;  1D4C A;  1GU6 A;  1QJD A;  2VR0 A;  3D1I A;  3SXQ A;  4L3Z A;  2OT4 A;  1D4D A;  1QO8 A;  4Q5C A;  3LGQ A;  1FT5 A;  1JNI A;  1JRY A;  4Q1O A;  3TOR A;  3F29 A;  1M1R A;  1M64 A;  1JRZ A;  3BNH A;  3BNG A;  2RDZ A;  1M1P A;  4Q4U A;  1OAH A;  3TTB A;  3UBR A;  1LJ1 A;  2E80 A;  4L38 A;  3MMO A;  1SP3 A;  4Q17 A;  2B7S A;  3BNF A;  3FO3 A;  2E81 A;  3BNJ A;  1Y0P A;  1JRX A;  1Q9I A;  3OWM A;  1QDB A;  1FS7 A;  3RKH A;  2B7R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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