1XR4A

X-ray crystal structure of putative citrate lyase alpha chain/citrate-acp transferase [salmonella typhimurium]
Total Genus 164
50100150200250300350400450020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
164
sequence length
506
structure length
506
Chain Sequence
AMKETVTMLNQQYVVPEGLQPYQGVTANSPWLASETEKRRRKICDSLEEAIRRSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWPLIEHIKNGVVRQIYTSGLRGKLGEEISAGLMENPVQIHSHGGRVKLIQSGELNIDVAFLGVPCCDEFGNANGFSGKSRCGSLGYAQVDAQYAKCVVLLTEEWVEFPNYPASIAQDQVDLIVQVDEVGDPEKITAGAIRLSSNPRELLIARQAANVIEHSGYFCDGFSLQTGTGGASLAVTRFLEDKMRRHNITASFGLGGITGTMVDLHEKGLIKALLDTQSFDGDAARSLAQNPHHIEISTNQYANPASKGAACERLNVVMLSALEIDVNFNVNVMTGSNGVLRGASGGHSDTAAGADLTIITAPLVRGRIPCVVEKVLTTVTPGASVDVLVTDHGIAVNPARQDLLDNLRAAGVALMTIEQLQQRAEQLTGKPQPIEFTDRVVAVVRYRDGSVIDVIRQVK
50100150200250300350400450400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/transferase
source organism Salmonella typhimurium
publication title X-ray crystal structure of putative citrate lyase alpha chain/citrate-ACP transferase from Salmonella typhimurium.
rcsb
molecule keywords putative citrate lyase alpha chain/citrate-ACP transferase
total genus 164
structure length 506
sequence length 506
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-10-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04223 CitF Citrate lyase, alpha subunit (CitF)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 1xr4A01
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 1xr4A02
4KGBA 2AHUA 1POIB 2NRCA 3CDKB 5DBNA 2AHVA 1K6DA 1O9LA 3DLXA 3RRLB 3D3UA 1XR4A 2AHWA 5DBNB 1OOYA 1M3EA 1OOZA 2HJ0A 3EH7A 2NRBA 3OXOA 1POIA 3QDQA 1OPEA 3CDKA 2OASA 3RRLA 3K6MA 3GK7A
chains in the Genus database with same CATH superfamily
4KGBA 2AHUA 1POIB 2NRCA 3CDKB 5DBNA 2AHVA 1K6DA 1O9LA 3DLXA 3RRLB 3D3UA 1XR4A 2AHWA 5DBNB 1OOYA 1M3EA 1OOZA 2HJ0A 3EH7A 2NRBA 3OXOA 1POIA 3QDQA 1OPEA 3CDKA 2OASA 3RRLA 3K6MA 3GK7A
chains in the Genus database with same CATH topology
4KGBA 2AHUA 1POIB 2NRCA 3CDKB 5DBNA 2AHVA 1K6DA 1O9LA 3DLXA 3RRLB 3D3UA 1XR4A 2AHWA 5DBNB 1OOYA 1M3EA 1OOZA 2HJ0A 3EH7A 2NRBA 3OXOA 1POIA 3QDQA 1OPEA 3CDKA 2OASA 3RRLA 3K6MA 3GK7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KGB A;  2AHU A;  1POI B;  2NRC A;  3CDK B;  5DBN A;  2AHV A;  1K6D A;  1O9L A;  3DLX A;  3RRL B;  3D3U A;  1XR4 A;  2AHW A;  5DBN B;  1OOY A;  1M3E A;  1OOZ A;  2HJ0 A;  3EH7 A;  2NRB A;  3OXO A;  1POI A;  3QDQ A;  1OPE A;  3CDK A;  2OAS A;  3RRL A;  3K6M A;  3GK7 A; 
#chains in the Genus database with same CATH topology
 4KGB A;  2AHU A;  1POI B;  2NRC A;  3CDK B;  5DBN A;  2AHV A;  1K6D A;  1O9L A;  3DLX A;  3RRL B;  3D3U A;  1XR4 A;  2AHW A;  5DBN B;  1OOY A;  1M3E A;  1OOZ A;  2HJ0 A;  3EH7 A;  2NRB A;  3OXO A;  1POI A;  3QDQ A;  1OPE A;  3CDK A;  2OAS A;  3RRL A;  3K6M A;  3GK7 A; 
#chains in the Genus database with same CATH homology
 4KGB A;  2AHU A;  1POI B;  2NRC A;  3CDK B;  5DBN A;  2AHV A;  1K6D A;  1O9L A;  3DLX A;  3RRL B;  3D3U A;  1XR4 A;  2AHW A;  5DBN B;  1OOY A;  1M3E A;  1OOZ A;  2HJ0 A;  3EH7 A;  2NRB A;  3OXO A;  1POI A;  3QDQ A;  1OPE A;  3CDK A;  2OAS A;  3RRL A;  3K6M A;  3GK7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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