2AHUA

Crystal structure of acyl-coa transferase (ydif) apoenzyme from escherichia coli o157:h7.
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
526
structure length
515
Chain Sequence
VKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISDLAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNNGGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLDLPLNQRKLVARRALFEMRKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGITSGANVNTRAILDMTSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDILDKMDFTPVISPELKLMDERLFIDAAMGFVLPEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystallographic trapping of the glutamyl-CoA thioester intermediate of family I CoA transferases.
pubmed doi rcsb
molecule tags Transferase
source organism Escherichia coli
molecule keywords putative enzyme ydiF
total genus 158
structure length 515
sequence length 526
chains with identical sequence B, C, D
ec nomenclature ec 2.8.3.8: Acetate CoA-transferase.
pdb deposition date 2005-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 2ahuA02
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 2ahuA01
3K6MA 1XR4A 3RRLA 3GK7A 1POIA 3D3UA 3CDKA 4KGBA 3EH7A 1OPEA 3RRLB 1OOZA 1K6DA 3QDQA 3OXOA 1POIB 1M3EA 3CDKB 5DBNA 2AHUA 2HJ0A 1O9LA 2AHVA 5DBNB 1OOYA 2OASA 2NRCA 2NRBA 2AHWA 3DLXA
chains in the Genus database with same CATH superfamily
3K6MA 1XR4A 3RRLA 3GK7A 1POIA 3D3UA 3CDKA 4KGBA 3EH7A 1OPEA 3RRLB 1OOZA 1K6DA 3QDQA 3OXOA 1POIB 1M3EA 3CDKB 5DBNA 2AHUA 2HJ0A 1O9LA 2AHVA 5DBNB 1OOYA 2OASA 2NRCA 2NRBA 2AHWA 3DLXA
chains in the Genus database with same CATH topology
3K6MA 1XR4A 3RRLA 3GK7A 1POIA 3D3UA 3CDKA 4KGBA 3EH7A 1OPEA 3RRLB 1OOZA 1K6DA 3QDQA 3OXOA 1POIB 1M3EA 3CDKB 5DBNA 2AHUA 2HJ0A 1O9LA 2AHVA 5DBNB 1OOYA 2OASA 2NRCA 2NRBA 2AHWA 3DLXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3K6M A;  1XR4 A;  3RRL A;  3GK7 A;  1POI A;  3D3U A;  3CDK A;  4KGB A;  3EH7 A;  1OPE A;  3RRL B;  1OOZ A;  1K6D A;  3QDQ A;  3OXO A;  1POI B;  1M3E A;  3CDK B;  5DBN A;  2AHU A;  2HJ0 A;  1O9L A;  2AHV A;  5DBN B;  1OOY A;  2OAS A;  2NRC A;  2NRB A;  2AHW A;  3DLX A; 
#chains in the Genus database with same CATH topology
 3K6M A;  1XR4 A;  3RRL A;  3GK7 A;  1POI A;  3D3U A;  3CDK A;  4KGB A;  3EH7 A;  1OPE A;  3RRL B;  1OOZ A;  1K6D A;  3QDQ A;  3OXO A;  1POI B;  1M3E A;  3CDK B;  5DBN A;  2AHU A;  2HJ0 A;  1O9L A;  2AHV A;  5DBN B;  1OOY A;  2OAS A;  2NRC A;  2NRB A;  2AHW A;  3DLX A; 
#chains in the Genus database with same CATH homology
 3K6M A;  1XR4 A;  3RRL A;  3GK7 A;  1POI A;  3D3U A;  3CDK A;  4KGB A;  3EH7 A;  1OPE A;  3RRL B;  1OOZ A;  1K6D A;  3QDQ A;  3OXO A;  1POI B;  1M3E A;  3CDK B;  5DBN A;  2AHU A;  2HJ0 A;  1O9L A;  2AHV A;  5DBN B;  1OOY A;  2OAS A;  2NRC A;  2NRB A;  2AHW A;  3DLX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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