2AHVA

Crystal structure of acyl-coa transferase from e. coli o157:h7 (ydif)-thioester complex with coa- 1
Total Genus 164
100200300400500020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
164
sequence length
526
structure length
512
Chain Sequence
VKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISDLAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNNGGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLDPLNQRKLVARRALFEMRKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGITANVNTRAILDMTSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDILDKMDFTPVISPELKLMDERLFIDAAMGFVLPEA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
source organism Escherichia coli
publication title Crystallographic trapping of the glutamyl-CoA thioester intermediate of family I CoA transferases.
pubmed doi rcsb
molecule keywords putative enzyme YdiF
total genus 164
structure length 512
sequence length 526
chains with identical sequence B, C, D
ec nomenclature ec 2.8.3.8: Acetate CoA-transferase.
pdb deposition date 2005-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 2ahvA02
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 2ahvA01
3CDKB 1M3EA 2AHVA 1POIB 3GK7A 3EH7A 3RRLA 1XR4A 5DBNA 3OXOA 3QDQA 2NRBA 5DBNB 3RRLB 2AHWA 2HJ0A 3DLXA 2OASA 1OOYA 2NRCA 3K6MA 3D3UA 1K6DA 1OPEA 3CDKA 1OOZA 1POIA 2AHUA 1O9LA 4KGBA
chains in the Genus database with same CATH superfamily
3CDKB 1M3EA 2AHVA 1POIB 3GK7A 3EH7A 3RRLA 1XR4A 5DBNA 3OXOA 3QDQA 2NRBA 5DBNB 3RRLB 2AHWA 2HJ0A 3DLXA 2OASA 1OOYA 2NRCA 3K6MA 3D3UA 1K6DA 1OPEA 3CDKA 1OOZA 1POIA 2AHUA 1O9LA 4KGBA
chains in the Genus database with same CATH topology
3CDKB 1M3EA 2AHVA 1POIB 3GK7A 3EH7A 3RRLA 1XR4A 5DBNA 3OXOA 3QDQA 2NRBA 5DBNB 3RRLB 2AHWA 2HJ0A 3DLXA 2OASA 1OOYA 2NRCA 3K6MA 3D3UA 1K6DA 1OPEA 3CDKA 1OOZA 1POIA 2AHUA 1O9LA 4KGBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CDK B;  1M3E A;  2AHV A;  1POI B;  3GK7 A;  3EH7 A;  3RRL A;  1XR4 A;  5DBN A;  3OXO A;  3QDQ A;  2NRB A;  5DBN B;  3RRL B;  2AHW A;  2HJ0 A;  3DLX A;  2OAS A;  1OOY A;  2NRC A;  3K6M A;  3D3U A;  1K6D A;  1OPE A;  3CDK A;  1OOZ A;  1POI A;  2AHU A;  1O9L A;  4KGB A; 
#chains in the Genus database with same CATH topology
 3CDK B;  1M3E A;  2AHV A;  1POI B;  3GK7 A;  3EH7 A;  3RRL A;  1XR4 A;  5DBN A;  3OXO A;  3QDQ A;  2NRB A;  5DBN B;  3RRL B;  2AHW A;  2HJ0 A;  3DLX A;  2OAS A;  1OOY A;  2NRC A;  3K6M A;  3D3U A;  1K6D A;  1OPE A;  3CDK A;  1OOZ A;  1POI A;  2AHU A;  1O9L A;  4KGB A; 
#chains in the Genus database with same CATH homology
 3CDK B;  1M3E A;  2AHV A;  1POI B;  3GK7 A;  3EH7 A;  3RRL A;  1XR4 A;  5DBN A;  3OXO A;  3QDQ A;  2NRB A;  5DBN B;  3RRL B;  2AHW A;  2HJ0 A;  3DLX A;  2OAS A;  1OOY A;  2NRC A;  3K6M A;  3D3U A;  1K6D A;  1OPE A;  3CDK A;  1OOZ A;  1POI A;  2AHU A;  1O9L A;  4KGB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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