2AHWA

Crystal structure of acyl-coa transferase from e. coli o157:h7 (ydif)-thioester complex with coa- 2
Total Genus 162
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
526
structure length
512
Chain Sequence
VKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISDLAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKEDLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNNGGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLDPLNQRKLVARRALFEMRKGAVGNVGVGIADGIGLVAREEGCADDFILTVETGPIGGITANVNTRAILDMTSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDILDKMDFTPVISPELKLMDERLFIDAAMGFVLPEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystallographic trapping of the glutamyl-CoA thioester intermediate of family I CoA transferases.
pubmed doi rcsb
molecule tags Transferase
source organism Escherichia coli
molecule keywords putative enzyme YdiF
total genus 162
structure length 512
sequence length 526
chains with identical sequence B, C, D
ec nomenclature ec 2.8.3.8: Acetate CoA-transferase.
pdb deposition date 2005-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 2ahwA02
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 2ahwA01
1OOZA 3EH7A 2AHVA 3CDKA 3K6MA 1XR4A 3RRLB 1OOYA 4KGBA 5DBNB 3OXOA 2NRCA 3DLXA 1O9LA 3QDQA 3CDKB 3GK7A 1K6DA 1POIA 1OPEA 2AHUA 2OASA 1M3EA 2AHWA 2HJ0A 3RRLA 3D3UA 5DBNA 1POIB 2NRBA
chains in the Genus database with same CATH superfamily
1OOZA 3EH7A 2AHVA 3CDKA 3K6MA 1XR4A 3RRLB 1OOYA 4KGBA 5DBNB 3OXOA 2NRCA 3DLXA 1O9LA 3QDQA 3CDKB 3GK7A 1K6DA 1POIA 1OPEA 2AHUA 2OASA 1M3EA 2AHWA 2HJ0A 3RRLA 3D3UA 5DBNA 1POIB 2NRBA
chains in the Genus database with same CATH topology
1OOZA 3EH7A 2AHVA 3CDKA 3K6MA 1XR4A 3RRLB 1OOYA 4KGBA 5DBNB 3OXOA 2NRCA 3DLXA 1O9LA 3QDQA 3CDKB 3GK7A 1K6DA 1POIA 1OPEA 2AHUA 2OASA 1M3EA 2AHWA 2HJ0A 3RRLA 3D3UA 5DBNA 1POIB 2NRBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OOZ A;  3EH7 A;  2AHV A;  3CDK A;  3K6M A;  1XR4 A;  3RRL B;  1OOY A;  4KGB A;  5DBN B;  3OXO A;  2NRC A;  3DLX A;  1O9L A;  3QDQ A;  3CDK B;  3GK7 A;  1K6D A;  1POI A;  1OPE A;  2AHU A;  2OAS A;  1M3E A;  2AHW A;  2HJ0 A;  3RRL A;  3D3U A;  5DBN A;  1POI B;  2NRB A; 
#chains in the Genus database with same CATH topology
 1OOZ A;  3EH7 A;  2AHV A;  3CDK A;  3K6M A;  1XR4 A;  3RRL B;  1OOY A;  4KGB A;  5DBN B;  3OXO A;  2NRC A;  3DLX A;  1O9L A;  3QDQ A;  3CDK B;  3GK7 A;  1K6D A;  1POI A;  1OPE A;  2AHU A;  2OAS A;  1M3E A;  2AHW A;  2HJ0 A;  3RRL A;  3D3U A;  5DBN A;  1POI B;  2NRB A; 
#chains in the Genus database with same CATH homology
 1OOZ A;  3EH7 A;  2AHV A;  3CDK A;  3K6M A;  1XR4 A;  3RRL B;  1OOY A;  4KGB A;  5DBN B;  3OXO A;  2NRC A;  3DLX A;  1O9L A;  3QDQ A;  3CDK B;  3GK7 A;  1K6D A;  1POI A;  1OPE A;  2AHU A;  2OAS A;  1M3E A;  2AHW A;  2HJ0 A;  3RRL A;  3D3U A;  5DBN A;  1POI B;  2NRB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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