2CZSA

Crystal structure analysis of the diheme c-type cytochrome dhc2
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
70
structure length
70
Chain Sequence
VRTKKVPLDTNHKRFYDAFAQGAGKLDLDRQCVECHHEKPGGIPFPKNHPVKPADGPMRCLFCHKFKLEH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and Biochemical Characterization of DHC2, a Novel Diheme Cytochrome c from Geobacter sulfurreducens
pubmed doi rcsb
molecule tags Electron transport
source organism Geobacter sulfurreducens
molecule keywords cytochrome c, putative
total genus 16
structure length 70
sequence length 70
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-07-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1130.20 Mainly Alpha Orthogonal Bundle Flavocytochrome C3; Chain A, domain 2 Flavocytochrome C3; Chain A, domain 2 2czsA01
2CZSA
chains in the Genus database with same CATH superfamily
1D4DA 4L3ZA 2E80A 4L38A 2OT4A 4Q0TA 2RF7A 1M1PA 1LJ1A 3L1TA 1D4CA 4Q5BA 1OAHA 3S7WA 1KSUA 3BNJA 1FS7A 2VR0A 1QO8A 3MMOA 1FS9A 1D4EA 1FT6A 2K3VA 3TORA 1Y0PA 3SCEA 1BVBA 1P2HA 3BNFA 3RKHA 2B7RA 3SXQA 3LG1A 3F29A 4Q4UA 4Q17A 1E39A 1JNIA 3LGQA 3D1IA 1QJDA 3GM6A 4Q1OA 2B7SA 3OWMA 1FS8A 1GU6A 2CZSA 1M64A 3BNGA 1JRZA 1KSSA 1M1RA 1Q9IA 3FO3A 4L3YA 1JRXA 1P2EA 4Q5CA 3BNHA 1QDBA 2J7AA 2ZO5A 4WJYA 3TTBA 3UU9A 1SP3A 4L3XA 2E81A 1JRYA 2RDZA 3UBRA 1FT5A 1M1QA
chains in the Genus database with same CATH topology
2CZSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CZS A; 
#chains in the Genus database with same CATH topology
 1D4D A;  4L3Z A;  2E80 A;  4L38 A;  2OT4 A;  4Q0T A;  2RF7 A;  1M1P A;  1LJ1 A;  3L1T A;  1D4C A;  4Q5B A;  1OAH A;  3S7W A;  1KSU A;  3BNJ A;  1FS7 A;  2VR0 A;  1QO8 A;  3MMO A;  1FS9 A;  1D4E A;  1FT6 A;  2K3V A;  3TOR A;  1Y0P A;  3SCE A;  1BVB A;  1P2H A;  3BNF A;  3RKH A;  2B7R A;  3SXQ A;  3LG1 A;  3F29 A;  4Q4U A;  4Q17 A;  1E39 A;  1JNI A;  3LGQ A;  3D1I A;  1QJD A;  3GM6 A;  4Q1O A;  2B7S A;  3OWM A;  1FS8 A;  1GU6 A;  2CZS A;  1M64 A;  3BNG A;  1JRZ A;  1KSS A;  1M1R A;  1Q9I A;  3FO3 A;  4L3Y A;  1JRX A;  1P2E A;  4Q5C A;  3BNH A;  1QDB A;  2J7A A;  2ZO5 A;  4WJY A;  3TTB A;  3UU9 A;  1SP3 A;  4L3X A;  2E81 A;  1JRY A;  2RDZ A;  3UBR A;  1FT5 A;  1M1Q A; 
#chains in the Genus database with same CATH homology
 2CZS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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