2CZSA

Crystal structure analysis of the diheme c-type cytochrome dhc2
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
70
structure length
70
Chain Sequence
VRTKKVPLDTNHKRFYDAFAQGAGKLDLDRQCVECHHEKPGGIPFPKNHPVKPADGPMRCLFCHKFKLEH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and Biochemical Characterization of DHC2, a Novel Diheme Cytochrome c from Geobacter sulfurreducens
pubmed doi rcsb
molecule tags Electron transport
source organism Geobacter sulfurreducens
molecule keywords cytochrome c, putative
total genus 16
structure length 70
sequence length 70
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-07-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1130.20 Mainly Alpha Orthogonal Bundle Flavocytochrome C3; Chain A, domain 2 Flavocytochrome C3; Chain A, domain 2 2czsA01
2CZSA
chains in the Genus database with same CATH superfamily
1M1RA 2E81A 1BVBA 3FO3A 4WJYA 1FT6A 4Q5BA 2ZO5A 1JRXA 1JRZA 1M1QA 1P2HA 1Y0PA 4L38A 4Q4UA 3TORA 1D4EA 1JNIA 4Q5CA 1FS9A 1FT5A 3F29A 3BNHA 2K3VA 3BNJA 1LJ1A 3LGQA 4Q1OA 2B7RA 1KSSA 4L3ZA 3D1IA 1D4DA 3LG1A 3SCEA 1QJDA 1QO8A 3SXQA 1SP3A 2VR0A 2E80A 3MMOA 1GU6A 3L1TA 3RKHA 1FS7A 2CZSA 1E39A 1FS8A 3BNFA 4Q0TA 1M1PA 1QDBA 2B7SA 4L3XA 4Q17A 3GM6A 2RDZA 3BNGA 1P2EA 2OT4A 3UBRA 1KSUA 3OWMA 3S7WA 3TTBA 4L3YA 1OAHA 1Q9IA 2J7AA 1M64A 2RF7A 1JRYA 3UU9A 1D4CA
chains in the Genus database with same CATH topology
2CZSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CZS A; 
#chains in the Genus database with same CATH topology
 1M1R A;  2E81 A;  1BVB A;  3FO3 A;  4WJY A;  1FT6 A;  4Q5B A;  2ZO5 A;  1JRX A;  1JRZ A;  1M1Q A;  1P2H A;  1Y0P A;  4L38 A;  4Q4U A;  3TOR A;  1D4E A;  1JNI A;  4Q5C A;  1FS9 A;  1FT5 A;  3F29 A;  3BNH A;  2K3V A;  3BNJ A;  1LJ1 A;  3LGQ A;  4Q1O A;  2B7R A;  1KSS A;  4L3Z A;  3D1I A;  1D4D A;  3LG1 A;  3SCE A;  1QJD A;  1QO8 A;  3SXQ A;  1SP3 A;  2VR0 A;  2E80 A;  3MMO A;  1GU6 A;  3L1T A;  3RKH A;  1FS7 A;  2CZS A;  1E39 A;  1FS8 A;  3BNF A;  4Q0T A;  1M1P A;  1QDB A;  2B7S A;  4L3X A;  4Q17 A;  3GM6 A;  2RDZ A;  3BNG A;  1P2E A;  2OT4 A;  3UBR A;  1KSU A;  3OWM A;  3S7W A;  3TTB A;  4L3Y A;  1OAH A;  1Q9I A;  2J7A A;  1M64 A;  2RF7 A;  1JRY A;  3UU9 A;  1D4C A; 
#chains in the Genus database with same CATH homology
 2CZS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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