2HJ0A

Crystal structure of the putative alfa subunit of citrate lyase in complex with citrate from streptococcus mutans, northeast structural genomics target smr12 .
Total Genus 156
50100150200250300350400450020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
511
structure length
510
Chain Sequence
ENKLGRDIPRKYANQYGVFEELAHIKSYKESSRQVKPVKPSDDKLLSSIHEAIEKTRLKDGMTISFHHHFREGDYVMNMVLDEIAKMGIKDISIAPSSIANVHEPLIDHIKNGVVTNITSSGLRDKVGAAISEGIMENPVIIRSHGGRARAIATDDIHIDVAFLGAPSSDAYGNANGTRGKTTCGSLGYAMIDAKYADQVVIVTDTLVPYPNTPISIPQTDVDYIVVVDAIGDPEGIAKGATRYTKNPKELLIAEYAAKVITSSPYYKEGFSFQTGTGGASLAVTRFMREQMIKDDIKANFALGGITNAMVELLEEGLVDKILDVQDFDHPSAVSLDRNAEKHYEIDANMYASPLSKGSVINQLDICVLSALEVDTNFNVNVMTGSDGVIRGASGGHCDTAFAAKMSLVISPLVRGRIPTFVDKVNTVITPGTSVDVVVTEVGIAINPNRPDLIEYFKDLKVPQLTIEELKEKAYAIVGNPQPIQYGDKIVALIEYRDGSLIDVVRNVLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
source organism Streptococcus mutans
publication title Crystal Structure of the Putative Alfa Subunit of Citrate Lyase in Complex with Citrate from Streptococcus mutans, Northeast Structural Genomics Target SmR12 (CASP Target).
rcsb
molecule keywords Putative citrate lyase, alfa subunit
total genus 156
structure length 510
sequence length 511
chains with identical sequence B
ec nomenclature ec 4.1.3.6: Citrate (pro-3S)-lyase.
pdb deposition date 2006-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04223 CitF Citrate lyase, alpha subunit (CitF)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 2hj0A01
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 2hj0A02
2AHWA 1O9LA 1POIA 5DBNA 3GK7A 3RRLB 2NRCA 3D3UA 3OXOA 2OASA 5DBNB 1POIB 3DLXA 1OOYA 4KGBA 1K6DA 2AHVA 1OPEA 3EH7A 2NRBA 1M3EA 3CDKA 1XR4A 2HJ0A 3K6MA 3QDQA 3CDKB 2AHUA 1OOZA 3RRLA
chains in the Genus database with same CATH superfamily
2AHWA 1O9LA 1POIA 5DBNA 3GK7A 3RRLB 2NRCA 3D3UA 3OXOA 2OASA 5DBNB 1POIB 3DLXA 1OOYA 4KGBA 1K6DA 2AHVA 1OPEA 3EH7A 2NRBA 1M3EA 3CDKA 1XR4A 2HJ0A 3K6MA 3QDQA 3CDKB 2AHUA 1OOZA 3RRLA
chains in the Genus database with same CATH topology
2AHWA 1O9LA 1POIA 5DBNA 3GK7A 3RRLB 2NRCA 3D3UA 3OXOA 2OASA 5DBNB 1POIB 3DLXA 1OOYA 4KGBA 1K6DA 2AHVA 1OPEA 3EH7A 2NRBA 1M3EA 3CDKA 1XR4A 2HJ0A 3K6MA 3QDQA 3CDKB 2AHUA 1OOZA 3RRLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AHW A;  1O9L A;  1POI A;  5DBN A;  3GK7 A;  3RRL B;  2NRC A;  3D3U A;  3OXO A;  2OAS A;  5DBN B;  1POI B;  3DLX A;  1OOY A;  4KGB A;  1K6D A;  2AHV A;  1OPE A;  3EH7 A;  2NRB A;  1M3E A;  3CDK A;  1XR4 A;  2HJ0 A;  3K6M A;  3QDQ A;  3CDK B;  2AHU A;  1OOZ A;  3RRL A; 
#chains in the Genus database with same CATH topology
 2AHW A;  1O9L A;  1POI A;  5DBN A;  3GK7 A;  3RRL B;  2NRC A;  3D3U A;  3OXO A;  2OAS A;  5DBN B;  1POI B;  3DLX A;  1OOY A;  4KGB A;  1K6D A;  2AHV A;  1OPE A;  3EH7 A;  2NRB A;  1M3E A;  3CDK A;  1XR4 A;  2HJ0 A;  3K6M A;  3QDQ A;  3CDK B;  2AHU A;  1OOZ A;  3RRL A; 
#chains in the Genus database with same CATH homology
 2AHW A;  1O9L A;  1POI A;  5DBN A;  3GK7 A;  3RRL B;  2NRC A;  3D3U A;  3OXO A;  2OAS A;  5DBN B;  1POI B;  3DLX A;  1OOY A;  4KGB A;  1K6D A;  2AHV A;  1OPE A;  3EH7 A;  2NRB A;  1M3E A;  3CDK A;  1XR4 A;  2HJ0 A;  3K6M A;  3QDQ A;  3CDK B;  2AHU A;  1OOZ A;  3RRL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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